BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4379.p (594 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093980|ref|YP_001099055.1| dihydroxy-acid dehydratase [Her... 230 1e-61 gi|134094317|ref|YP_001099392.1| phosphogluconate dehydratase [H... 140 2e-34 >gi|134093980|ref|YP_001099055.1| dihydroxy-acid dehydratase [Herminiimonas arsenicoxydans] Length = 557 Score = 230 bits (587), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 169/532 (31%), Positives = 274/532 (51%), Gaps = 28/532 (5%) Query: 32 RFMNYGITAEELRSGRPIIGIAQSGSDISPCNRIHLELAKRVRDGIRDAGGIPMEFPLHP 91 R M Y + E+ +P++GIA S I+PCN +LA I+DAGG P F Sbjct: 20 RSMYYAMGYEKADFDKPMVGIANGHSTITPCNSGLQKLADIAIKTIKDAGGNPQVFGTPT 79 Query: 92 IFENCRRPT-----AAIDRNLAYLGLVEILHGYPIDAVVLTTGCDKTTPSQIMAAATVDI 146 I + T + I R + + ++G +D V++ GCDK P ++A ++ Sbjct: 80 ISDGMSMGTEGMKYSLISREVIADCIETAVNGQWMDGVLVIGGCDKNMPGGMIAMLRTNV 139 Query: 147 PAIVLSGGPMLDGWMDGELVGSGSAIWKGRKLLSAGSIDNEKFLEIAAASAPSSGHCNTM 206 P+I + GG + G G+ + SA ++ +AG + E F I + PSSG C M Sbjct: 140 PSIYVYGGTIKPGHWKGKDLTIVSA-FEAVGEFTAGRMSQEDFDGIERNACPSSGSCGGM 198 Query: 207 GTASTMNAMAEALGMSLTGCSAIPAPYRERGQMAYETGRRIVGMAYEDLRPSAILTREAF 266 TA+TM++ EALG++L S + P E+ A E+ R ++ +DL+P I+TR+A Sbjct: 199 YTANTMSSSFEALGLALPYSSTMANPDDEKVGSAAESARVLIEAIKKDLKPRDIVTRKAI 258 Query: 267 LDAIVVNAAIGGSTNAQPHIMAMARHAGVELHSEDWMKYGYDVPLLLNMQPAGKYLGERF 326 +A+ V A GGSTNA H +A+A A ++ +D+ + VP++ +++P+GKY+ Sbjct: 259 ENAVAVIMATGGSTNAVLHFLAIAHAAEIDWTIDDFERMRKKVPVICDLKPSGKYVATDL 318 Query: 327 HRAGGVPAIMWELQQAGKLRAERITASGKTMAENLQ---GRQSNDREMIYPFAAPLRERA 383 H+AGG+P +M L AG L + +T +G+T+AE L S D+++I+ L + Sbjct: 319 HKAGGIPQVMKVLLDAGLLHGDCMTITGQTVAEALAHIPSVPSADQDVIHTIDKALYAQG 378 Query: 384 GFLVLKGNLF-DFAIMKTSVISEAFRERYLSTPGQENIFECRAVVFDGSDDYHARINDPA 442 +LKGNL + + K + + ++ P A VFD D+Y A A Sbjct: 379 HLAILKGNLSPEGCVAKIT----GLKNPVITGP---------ARVFD--DEYSAMDAIMA 423 Query: 443 LKIDENTLLAIRGAGPVGWPGSAEVVNMQPPDALIKRGV-STLPTLGDGRQSGTSDSPSI 501 +I +L +R GP G PG E+ + P AL+ +G+ ++ + DGR SG + + Sbjct: 424 NQIKAGDVLVMRYLGPKGGPGMPEM--LAPTSALVGQGLGESVGLITDGRFSGGTWGMVV 481 Query: 502 LNASPESAVGGGLAYLRDGDRVRIDLNTGECNMLISEEELARRKSEGIPPVP 553 + SPE+ VGG + + +GD V ID + +SEEE+ARR++ P P Sbjct: 482 GHVSPEAFVGGTIGLVEEGDSVTIDARQLLIQLNVSEEEIARRRANWKQPAP 533 >gi|134094317|ref|YP_001099392.1| phosphogluconate dehydratase [Herminiimonas arsenicoxydans] Length = 637 Score = 140 bits (353), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 142/558 (25%), Positives = 233/558 (41%), Gaps = 54/558 (9%) Query: 48 PIIGIAQSGSDISPCNRIHLELAKRVRDGIRDAGGIPMEFPLHPIFENCRRPT------- 100 P + I + +D+ ++ + + ++D +R AGG+ P C T Sbjct: 68 PSVAIISAYNDMLSAHQPYERFPRIIKDAVRAAGGVAQFAGGVPAM--CDGITQGQPGME 125 Query: 101 -AAIDRNLAYLGLVEILHGYPIDAVVLTTGCDKTTPSQIMAAATV-DIPAIVLSGGPMLD 158 + R+ + L DA V CDK P ++ A +PA+ + GGPM Sbjct: 126 LSLFSRDTIAMSTAIALSHNMFDAAVFLGICDKIVPGLLIGALHFGHLPAVFIPGGPMTT 185 Query: 159 GWMDGELVGSGSAIWKGRKLLSAGSIDNEKFLEIAAASAPSSGHCNTMGTASTMNAMAEA 218 G S S + R+L + G ID E LE + S +G C GTA++ + E Sbjct: 186 GM-------SNSEKSRIRQLYAQGKIDREALLEAESKSYHDAGTCTFYGTANSNQMLMEV 238 Query: 219 LGMSLTGCSAIPAPYRERGQMAYETGRRIVGMAYE--DLRPSAILTRE-AFLDAIVVNAA 275 +G+ L G + + R + +R V ++ + P L E ++AIV Sbjct: 239 MGLHLPGSAFVTPNTPLRDALTVRAAQRAVEISAQGQTFTPVGRLVDEKTIVNAIVALLT 298 Query: 276 IGGSTNAQPHIMAMARHAGVELHSEDWMKYGYDVPLLLNMQPAGKYLGERFHRAGGVPAI 335 GGSTN H++A+A+ AG+ + D+ + VPLL + P G+ FH AGG + Sbjct: 299 TGGSTNHTIHLIAIAKAAGIVIDWNDFDQLSAVVPLLTRIYPNGEADVNHFHAAGGTGFV 358 Query: 336 MWELQQAGKLRAERITASGKTMAEN-----LQGRQ---------SNDREMIYPFAAPLRE 381 + EL AG L + T G+ + + L G Q S D ++ P P Sbjct: 359 IRELLDAGLLHDDVTTILGEGLRAHCAEPFLDGDQAVWKPAPHISADESVLRPADRPFAP 418 Query: 382 RAGFLVLKGNLFDFAIMKTSVISEAFRERYLSTPGQENIFECRAVVFDGSDDYHARINDP 441 G +L GNL A++K S + + E A+VF +++ D Sbjct: 419 DGGLRLLTGNL-GRAVIKISAVKPEYHR-----------VEAPAIVFKSQEEFMHAYQDG 466 Query: 442 ALKIDENTLLAIRGAGPVGWPGSAEVVNMQPPDALIKRGVSTLPTLGDGRQSGTSDS-PS 500 K++++ + +R GP G E+ + P ++ + + DGR SG S P+ Sbjct: 467 --KLNQDFVAVVRFQGPKA-NGMPELHALTPALGSLQDAGFHVALVTDGRMSGASGKVPA 523 Query: 501 ILNASPESAVGGGLAYLRDGDRVRIDLNTGECNMLISEEELARRKSEGIPPVPPSQTPWQ 560 ++ SPE GG L +RDGD + +D G L+ E +R + + Sbjct: 524 AIHVSPEVLAGGPLGKIRDGDIILLDAEAGILQALVDAAEWQQRPHASVDRSANVVGMGR 583 Query: 561 EI---YRSTVGQLETGAC 575 E+ +RS+V E GA Sbjct: 584 ELFAMFRSSVSIAEEGAA 601 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,183,460 Number of extensions: 51625 Number of successful extensions: 147 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 139 Number of HSP's successfully gapped: 2 Length of query: 594 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 507 Effective length of database: 713,682 Effective search space: 361836774 Effective search space used: 361836774 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)