BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4376.p (518 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter AT... 126 2e-30 gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Her... 114 1e-26 gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 108 8e-25 gi|134094169|ref|YP_001099244.1| macrolide ABC transporter ATP-b... 98 1e-21 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 98 1e-21 >gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 534 Score = 126 bits (317), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 147/544 (27%), Positives = 258/544 (47%), Gaps = 57/544 (10%) Query: 5 LLEMKGIVKSFGGVRALDGIDIKIRPGECVGLCGENGAGKS-TLMKILSGVYPHGTWEGE 63 LLE++ + SF + ++ + I GE L GE+G+GK+ T + IL + + G Sbjct: 3 LLEIQNLQVSFDTSKVVNDVSFSIAAGEKFALVGESGSGKTVTALSILR-LNQDAAYAGR 61 Query: 64 ILWDGKPLQAHS---VRDTEAAGIVIIHQELM--LVPELSVAENI---FMGHEITLPGGR 115 IL++G+ + S +R + +I QE M L P ++ I M HE G Sbjct: 62 ILFEGQDILQRSEAAMRAVRGKDVAMIFQEPMTALNPLFTIGNQIAEGLMLHE----GLS 117 Query: 116 MNYPAMYRRAEELMRELNMPDIN---VALPVSQYGGGHQQLVEIAKALNKDARLLILDEP 172 A+ RA EL+ + +P+ ++ P Q GG +Q IA AL +LLI DEP Sbjct: 118 ARIAAL--RAIELLDKTGIPEPQRRALSYP-HQLSGGQRQRAMIAMALACKPKLLIADEP 174 Query: 173 SSSLTASEIAVLLKIIKDL-KARGVACVYISHKLDEVAEICDTISVIRDGKHIATTPMQE 231 +++L + +++++ L + +A + I+H L+ V D + V+ G + +E Sbjct: 175 TTALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGCLVEVAATRE 234 Query: 232 MDVDKIITQMVGREITAMYPER-NHAIGEV---VLEARHITC-YDIDNPRRKR-----VD 281 + + R++ A P++ + + E +L A H+ C +DI K VD Sbjct: 235 LFTAP--RETYTRKLLASQPQQLVNTLNESAVPLLSAEHVRCTFDIKQGWFKTTPFVAVD 292 Query: 282 DVSFSVRRGEILGIAGLVGAGRTELVSAIFGAYRGRYEGQILLEGQP--ADTGSPLKSIR 339 DVS VR GE LGI G G+G+T L A+ R G I +G+P A L+ +R Sbjct: 293 DVSVQVRPGETLGIVGESGSGKTTLGLALLRLSSARVSGTIAFDGKPLNAMQSDALRPLR 352 Query: 340 QGLCMVPEDRKHHGIVP----DLDVGQNITLTVLNRFSRGSRIDSSAELKTIQGEINRLR 395 + +V +D + P + VG+ + L + G R + L + G + Sbjct: 353 ARMQIVFQD-PFASLSPRRTIEQIVGEGLALHQPQLGAAGIRKAVADALLEV-GLPPDIM 410 Query: 396 VKTASPFLPITGLSGGNQQKAVLSKMLLAQPKVLILDEPTRGVDVGAKAEIYRLISDLAK 455 + F SGG +Q+ ++++L+ +P +++LDEPT +DV + ++ +L+ +L K Sbjct: 411 ARYPHEF------SGGQRQRIAIARVLVLKPDLVLLDEPTSSLDVSVQQQVLQLLLELQK 464 Query: 456 A-GLAIIMVSSELAEVLGVSDRVLVIGEGRLRGDFVNDNLSQETVLAAAINQPVPQANSR 514 LA I +S +LA + ++ RV+V+ +G++ V ++Q A ++QP R Sbjct: 465 KYELAYIFISHDLAVIRAMAHRVMVMKDGKV----VESGMTQ-----AVLSQPTEAYTQR 515 Query: 515 AAAG 518 A Sbjct: 516 LLAA 519 >gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Herminiimonas arsenicoxydans] Length = 931 Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 133/505 (26%), Positives = 219/505 (43%), Gaps = 55/505 (10%) Query: 15 FGGVRALDGIDIKIRPGEC-VGLCGENGAGKSTLMKILSGVYPHGTWEGEILWDGKPLQA 73 +G AL I + I P +C VGL G +G GKS+L+ + +G ++L G ++ Sbjct: 18 YGKTVALADISLDI-PAQCMVGLIGPDGVGKSSLLALAAGARKMQQGSADVL--GGDMRR 74 Query: 74 HSVRDTEAAGIVIIHQEL--MLVPELSVAENI-----FMGHEITLPGGRMNYPAMYRRAE 126 RD I + Q L L P LSV EN+ GH+ RR + Sbjct: 75 KRHRDAVCPRIAYMPQGLGKNLYPTLSVEENLQFFARLFGHDAA---------ERRRRID 125 Query: 127 ELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASEIAVLLK 186 L R + + PV + GG +Q + + AL D LLILDEP++ + A Sbjct: 126 SLTRSTGLFPF-LTRPVGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLARAQFWS 184 Query: 187 IIKDLKAR--GVACVYISHKLDEVAEICDTISVIRDGKHIATTPMQEM-------DVDKI 237 +I ++ + ++ + + +DE A+ D + + G+ +AT QE+ D++ Sbjct: 185 LIAGIRQQRPQISVIVATAYMDE-AQGFDWLVAMDGGRVLATGAPQELLAQTGSADLEAA 243 Query: 238 ITQMV------GREITAMYPERNHAIGEVVLEARHITCYDIDNPRRKRVDDVSFSVRRGE 291 ++ G + + P A EV +EAR +T D VD V+F +RRGE Sbjct: 244 FIALLPEEKKRGHQAVEIQPLALGADAEVAIEARDLTMRFGDF---TAVDHVNFRIRRGE 300 Query: 292 ILGIAGLVGAGRTELVSAIFGAYRGRYEGQILLEGQPADTGSPLKSIRQGLCMVPEDRKH 351 I G G G G+T + + G EG+ L G D R G + Sbjct: 301 IFGFIGSNGCGKTTTMKVLTGLLAAS-EGRAWLFGHEVDPHDIATRRRVGYM-----SQS 354 Query: 352 HGIVPDLDVGQNITLTVLNRFSRGSRIDSSAELKTIQGEINRLRVKTASPFLPITGLSGG 411 + +L V QN+ L +R + + Q + R ++ LP L G Sbjct: 355 FSLYSELSVMQNLVL-----HARLFNVPEAEVAARAQQMLTRFGLEEEIDALP-NKLPLG 408 Query: 412 NQQKAVLSKMLLAQPKVLILDEPTRGVDVGAKAEIYRLISDLAKAGLAIIMVSSELAEVL 471 +Q+ L+ ++ P++LILDEPT GVD A+ +RL+ +L++ I +S+ Sbjct: 409 MRQRLSLAVAMVHGPELLILDEPTSGVDPVARDNFWRLLIELSRRDRVTIFISTHFMNEA 468 Query: 472 GVSDRVLVIGEGRLRGDFVNDNLSQ 496 DR+ ++ G++ V+D +Q Sbjct: 469 ERCDRISLMHAGKV---LVSDTPAQ 490 Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 14/232 (6%) Query: 2 SEYLLEMKGIVKSFGGVRALDGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWE 61 +E +E + + FG A+D ++ +IR GE G G NG GK+T MK+L+G+ E Sbjct: 270 AEVAIEARDLTMRFGDFTAVDHVNFRIRRGEIFGFIGSNGCGKTTTMKVLTGLLAAS--E 327 Query: 62 GEILWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGGRMNYP-- 119 G G + H + G + Q L ELSV +N+ + + N P Sbjct: 328 GRAWLFGHEVDPHDIATRRRVG--YMSQSFSLYSELSVMQNLVLHARL------FNVPEA 379 Query: 120 AMYRRAEELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTAS 179 + RA++++ + + ALP ++ G +Q + +A A+ LLILDEP+S + Sbjct: 380 EVAARAQQMLTRFGLEEEIDALP-NKLPLGMRQRLSLAVAMVHGPELLILDEPTSGVDPV 438 Query: 180 EIAVLLKIIKDLKARGVACVYISHKLDEVAEICDTISVIRDGK-HIATTPMQ 230 +++ +L R ++IS AE CD IS++ GK ++ TP Q Sbjct: 439 ARDNFWRLLIELSRRDRVTIFISTHFMNEAERCDRISLMHAGKVLVSDTPAQ 490 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 108 bits (269), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 16/235 (6%) Query: 3 EYLLEMKGIVKSFGGVRALDGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWEG 62 + +L + + K FGG++AL +++KI G+ GL G NGAGK+T +++G+Y + Sbjct: 8 QIILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSF 67 Query: 63 EILWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEIT----LPGGRMNY 118 E+ GK + AGI Q + L E++ EN+ +G + L G ++ Sbjct: 68 EL--AGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHH 125 Query: 119 PAMYRRAEELMRELNMPDINVALPVSQYGG--------GHQQLVEIAKALNKDARLLILD 170 A R+ E +R M ++ + ++Q+ G G Q+ +EIA+AL D +LL LD Sbjct: 126 KAA-RQEEAAIRARAMELLDF-VGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALD 183 Query: 171 EPSSSLTASEIAVLLKIIKDLKARGVACVYISHKLDEVAEICDTISVIRDGKHIA 225 EP++ + A+E L +++ +KA G + I H + V +CD I+V+ GK IA Sbjct: 184 EPAAGMNATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIA 238 Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/216 (23%), Positives = 99/216 (45%), Gaps = 17/216 (7%) Query: 280 VDDVSFSVRRGEILGIAGLVGAGRTELVSAIFGAYRGRYEGQILLEGQPADTGSPLKSIR 339 + DV+ + +G+I G+ G GAG+T + I G Y+ G L G+ +P + Sbjct: 26 LTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQAD-SGSFELAGKAYSPSAPHLVAK 84 Query: 340 QGLCMVPEDRKHHGIVPDLDVGQNITLTVLNRFSRGSRIDSSAELKTIQGEINRLRVKTA 399 G+ ++ + G + L+ N+ + R +G + K + E +R + A Sbjct: 85 AGIARTFQNIRLFGEMTALE---NVMVGRHVRTHQG-LFGAVFHHKAARQEEAAIRAR-A 139 Query: 400 SPFLPITG-----------LSGGNQQKAVLSKMLLAQPKVLILDEPTRGVDVGAKAEIYR 448 L G LS G+Q++ +++ L P++L LDEP G++ K + Sbjct: 140 MELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMNATEKLGLRE 199 Query: 449 LISDLAKAGLAIIMVSSELAEVLGVSDRVLVIGEGR 484 L+ + G I+++ ++ V+G+ DR+ V+ G+ Sbjct: 200 LLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGK 235 >gi|134094169|ref|YP_001099244.1| macrolide ABC transporter ATP-binding/membrane protein [Herminiimonas arsenicoxydans] Length = 655 Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 123/245 (50%), Gaps = 44/245 (17%) Query: 5 LLEMKGIVKSF--GG--VRALDGIDIKIRPGECVGLCGENGAGKSTLMKIL-------SG 53 L+E++G+ K++ GG V L GID+KI GE V + G +G+GKSTLM IL +G Sbjct: 16 LIELRGVTKTYRNGGLEVEVLHGIDLKIYEGEFVAIMGASGSGKSTLMNILGCLDRPTTG 75 Query: 54 VYPHGTWEGEILWD-GKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLP 112 Y + G + D G+ +A RD + Q L+ S AEN+ Sbjct: 76 SY---YFMGRDVSDFGRDERALLRRDDFG----FVFQSYNLIASASAAENV--------- 119 Query: 113 GGRMNYPAMYR---------RAEELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKD 163 PAMY RA+ L+ EL + D + P +Q GG QQ V I++AL Sbjct: 120 ----EVPAMYSGLPPAERHARAQALLTELGLADRSHHRP-NQLSGGQQQRVSISRALMNG 174 Query: 164 ARLLILDEPSSSLTASEIAVLLKIIKDLKARGVACVYISHKLDEVAEICDTISVIRDGKH 223 R+++ DEP+ +L + ++K++ DL ARG + I+H EVA+ + I+DG H Sbjct: 175 GRIILADEPTGALDSKSGQDVMKLLADLSARGHTVLLITHA-KEVADHAQRLIEIKDG-H 232 Query: 224 IATTP 228 I + P Sbjct: 233 ILSDP 237 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 120/229 (52%), Gaps = 9/229 (3%) Query: 1 MSEYLLEMKGIVKSFGGVRALDGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTW 60 MS L+ + G+ KS+G + + + +++ GE +GL G NGAGK+T ++ G+ P Sbjct: 1 MSSKLI-VSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDA- 58 Query: 61 EGEILWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGGR-MNYP 119 G I DG + + G+ + QE + +LSV +NI E+ G+ ++ Sbjct: 59 -GRIELDGVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALSKE 117 Query: 120 AMYRRAEELMRELNMPDI--NVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLT 177 + +R + L+ +L + + N AL +S GG ++ VEIA+AL + R ++LDEP + + Sbjct: 118 QIEQRLDTLLADLQIEKLRENQALSLS---GGERRRVEIARALATNPRFVLLDEPFAGVD 174 Query: 178 ASEIAVLLKIIKDLKARGVACVYISHKLDEVAEICDTISVIRDGKHIAT 226 + + +I++ LK RG+ + H + E ICD +I G +A+ Sbjct: 175 PIAVIEIQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLAS 223 Score = 68.9 bits (167), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 15/212 (7%) Query: 277 RKRVDDVSFSVRRGEILGIAGLVGAGRTELVSAIFGAYRGRYEGQILLEGQPADTGSPLK 336 R+ V DV+ V GE++G+ G GAG+T I G G+I L+G K Sbjct: 17 RQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSD-AGRIELDGVDISRQPIHK 75 Query: 337 SIRQGLCMVPEDRKHHGIVPDLDVGQNITLTV-LNRFS----RGSRIDSSAELKTIQGEI 391 + GL +P++ + L V NI + L R + +I+ + +I Sbjct: 76 RAQLGLSYLPQE---ASVFRKLSVEDNIRAVLELQRVNGKALSKEQIEQRLDTLLADLQI 132 Query: 392 NRLRVKTASPFLPITGLSGGNQQKAVLSKMLLAQPKVLILDEPTRGVDVGAKAEIYRLIS 451 +LR A LSGG +++ +++ L P+ ++LDEP GVD A EI R++ Sbjct: 133 EKLRENQA------LSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQRIVR 186 Query: 452 DLAKAGLAIIMVSSELAEVLGVSDRVLVIGEG 483 L + G+ +++ + E LG+ DR +I +G Sbjct: 187 FLKERGIGVLITDHNVRETLGICDRAYIINQG 218 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 979,764 Number of extensions: 42675 Number of successful extensions: 384 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 307 Number of HSP's successfully gapped: 76 Length of query: 518 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 432 Effective length of database: 716,977 Effective search space: 309734064 Effective search space used: 309734064 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)