BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4369.p
         (691 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094194|ref|YP_001099269.1| putative vitamin B12 receptor [...    60   3e-10
gi|134096547|ref|YP_001101622.1| catecholate siderophore recepto...    60   4e-10

>gi|134094194|ref|YP_001099269.1| putative vitamin B12 receptor
           [Herminiimonas arsenicoxydans]
          Length = 651

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 129/544 (23%), Positives = 213/544 (39%), Gaps = 74/544 (13%)

Query: 76  IGADHIQQQQVQYNW-----ELFAQSPGVMLTQFRQGNESGKLSLRGFNGEGEVNAVKLL 130
           IGA  I  QQ++ +      E   +  GV     + G     L LRGF      N V + 
Sbjct: 56  IGATVITAQQIRDSGAGSINEAIRKIAGVFGRASQSGTSDSSLDLRGFGSSSNQN-VAIF 114

Query: 131 IDGVPSNDNAGGMPFLGTLLPLNIERIEVVRGTNDARYGLHNIAGNINILTREGGNYDEA 190
           +DG+  ++N      +  +   ++ERIEVVRG +   YG     G I I+T+ G      
Sbjct: 115 VDGIRISENELQPAVMSAIAIESVERIEVVRGGSSVLYGEGATGGTIQIITKRGSTKGTH 174

Query: 191 RLTYGSFNTRQLQVVKGVENGNW---SQNYFLGYEKSDGYRQHAQGENIAFSGKWFYTSD 247
                    R  + ++   N  W   S +  LG  ++D YR + +     FSG   +   
Sbjct: 175 GSVVAEIGNRGHEEIRASLNAGWDGFSIDANLGALRTDNYRANNELRQENFSGGVQWALQ 234

Query: 248 DGRYRTGLSIRHANGYAQEPGYLTAQDARRDPTASYAYAQSDGGNRQMDQVSLHFDAEVD 307
           +G  + G  +  A    + PG LT     ++P  +     ++ G+   D+ +   D    
Sbjct: 235 NG--KVGFRVDSARQDLRLPGSLTLSQYLQNPRQT--LKPTENGSLDSDRYTFFVDQRY- 289

Query: 308 AQLSLATKLYLNRVRDQRWLRYSSTTSQQERIIDETHYGLLSTAT-----YRPQWKALAG 362
             L LA  L                 S +E+       G LS A      + P+ K ++ 
Sbjct: 290 GNLELAADL-----------------SYREKTSKGDFSGFLSNAESEVKQFSPRAKYVSN 332

Query: 363 L----NDLALEGGFNLERQEDQSPRYSTVNKVRVVQTRDHHFVFDTVGAYVQAVITPVSS 418
                N+L +   F+  ++  QS      N        D H    ++  Y +  I    +
Sbjct: 333 FGSTRNELIVGMDFSDSKRFTQSSFNGAANA-------DEHTSQQSMAIYGRNEIR-FGN 384

Query: 419 LRIIPGYRVDHVGGRFNDPSR-GVSYGIQDYGIIKQPKLSLVYSPFQQASLYANWGRTFQ 477
           +R+  G R +    +F+   R G SY  Q +  +    L+  Y      SL+   G++++
Sbjct: 385 MRVAAGARHE----KFDQDLRAGTSYN-QSFS-LNAFDLNASYELTPLVSLFGKAGKSYR 438

Query: 478 VG-AGAAAYKSNNNDLRPSINDGWETGIKFTPADWLDGRVAVWEQRASDEVKRRLNDPT- 535
           V      A+ S    L P  ++  E G  F   D       V+  +  DE+     DPT 
Sbjct: 439 VANVDENAFLS--KPLNPQRSNDLELGGLFGN-DNNKLIAKVFRHKLKDEI---FYDPTA 492

Query: 536 ----GDSENVGRTKRSGVDLQLNLRAGKRTTVWLAYSRQK-SEIVTPDPSAPDTMGKEID 590
               G + N+ RTKR GV+++   RA   +  +L+   Q  S   T  P++    GKE+ 
Sbjct: 493 GGGVGANVNLDRTKRQGVEIE--GRARLSSEFFLSAVLQHVSAKFTDGPNS----GKEMV 546

Query: 591 HVPR 594
            VP+
Sbjct: 547 LVPK 550


>gi|134096547|ref|YP_001101622.1| catecholate siderophore receptor
           Fiu [Herminiimonas arsenicoxydans]
          Length = 759

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 128/285 (44%), Gaps = 27/285 (9%)

Query: 424 GYRVDHVGGRFNDPSRGV-SYGIQDYGIIKQPKLSLVYSPFQQASLYANWGRTFQVGAGA 482
           G RVDH   ++   +  V +  +   G +   KL  +Y P + +SLY ++  + Q   G+
Sbjct: 485 GVRVDHYDTKYESSTLNVRNATLNKSGTLLNWKLGGLYKPTEDSSLYVSYATSKQPPGGS 544

Query: 483 AAYKSNNNDLRPSIN-DGWETGIKFTPADW--LDGRVAVWEQRASDEVKRRLNDPTGDS- 538
               S+N +   ++N D  ET      A W  LD R+ +       +VK  +     D  
Sbjct: 545 NFALSSNANSAANVNYDPQETRTAEIGAKWDLLDKRLGLTTAIYRTDVKNEIEGNATDGF 604

Query: 539 ENVGRTKRSGVDLQLNLRAGKRTTVW---LAYSRQKSEIVTPDPSAPD-TMGKEIDHVPR 594
              G+ +  GV+L +    G+ T+ W     Y+R ++++        D T G  + + P+
Sbjct: 605 TQTGKKRVEGVELGV---VGEITSAWQVSAGYTRMRTDVTAGAIVNQDGTSG--LSYTPK 659

Query: 595 AVYSGGVDYQASAALKLSASVNGQGSYYLTTANT--GGKFG------GYTLFNASATYQV 646
             ++    Y+      +     G G+ ++   +    G  G       Y +++A A+Y+V
Sbjct: 660 QAFTAWTTYKLPGGFTI-----GGGARFVDALHKPKDGAVGTPQFVESYWVYDAMASYEV 714

Query: 647 TPSLSLELQLKNLANRYYEYVWINDQTRHAPGDGRAVYVSANVKY 691
           + ++SL+L L NLA++ Y         R+ PG  R+  +SAN+K+
Sbjct: 715 SKNVSLQLNLYNLADKDYVASINKSGYRYTPGIERSARLSANIKF 759


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,345,833
Number of extensions: 56975
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 3
Length of query: 691
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 603
Effective length of database: 710,387
Effective search space: 428363361
Effective search space used: 428363361
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)