BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4368.p (526 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 269 2e-73 gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 266 1e-72 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 258 7e-70 gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis pro... 256 2e-69 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 256 2e-69 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 269 bits (688), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 205/535 (38%), Positives = 303/535 (56%), Gaps = 48/535 (8%) Query: 11 LPLALRIALTFGTLLLLCVLAGAIGLWQLHLVG------------SKLDAVVNDGN---- 54 L + +R+ L F +LLL IG+W+L V +L + GN Sbjct: 6 LKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQATVRMEEAAEQERLSIQWHAGNSANA 65 Query: 55 -RNLALAQDLSQQVHIGVESFQSVIIISDKAAAEAAMQRGGAAHERFI--TQRKALLEAV 111 R A + +Q+V + FQ+ + A + + E I + K L+ AV Sbjct: 66 IRTTARIRSTNQEVQ---QQFQN-----EMTAQSVEITKLQNKLESLIHSEEGKKLMSAV 117 Query: 112 SDQQTRGLVETIFAINDQRAEPAFGRFVQLSMTGQ---REEAGAWLATQLNPALSQLQAA 168 D++T + D R E +L G EEA +A++++PAL Sbjct: 118 GDKRTVYM--------DIRKE-----VFKLKADGSPAAEEEAKKIIASKMDPALETYSKT 164 Query: 169 IKALIDFQTARNQQLQQQSQRDSTRGRWLMAACFLACILFAGGAGYGLMRTMRKSLGGEP 228 ++ ++DFQ + + + GR + + + + L R++ + L Sbjct: 165 VQDVVDFQQVTFLEAKTEVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPL---- 220 Query: 229 HDALQVAREIADGNLMVRVPVAGHDQAS-MMAAMREMRDKLIEVVGVVNHNAQAVAAASQ 287 A++VAR +A G+L R+ V D+ ++ A+R+M D L++ V V + +A AS Sbjct: 221 EYAVEVARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASN 280 Query: 288 EIAHGHHDLSERTEIQASSLQQTTASMGELSSKVRYTAEQSALACRLSEQAADATRSGRE 347 +IA G+ DLS RTE QASSL++T +SM EL+S V+ A+ + A +L+ A+ G Sbjct: 281 QIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGV 340 Query: 348 VVERVITQMQDIDTSSGKIVDIISVIEGLAFQTNILALNAAVEAARAGEQGRGFAVVATE 407 VV +V+ M+DI++S+ KIVDII VI+G+AFQTNILALNAAVEAARAGEQGRGFAVVA+E Sbjct: 341 VVSQVVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE 400 Query: 408 VRTLAQRSAAASREIKQLILASVDSSAAASKLSREAGAAMQQVVQSIDRVSAVMNDISSA 467 VR LAQRSAAA++EIK LI SVD SKL EAG M++VV S+ RV+ +M++I +A Sbjct: 401 VRNLAQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAA 460 Query: 468 NQEQSTGIGEVNQALIQLDDLTQKNAALVEEATAASIFLKDKASELKRSVLTFQL 522 +QEQS GI +VNQA+ Q+D +TQ+NAALVEEA AA+ L ++A +L +V F+L Sbjct: 461 SQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKL 515 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 266 bits (681), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 166/310 (53%), Positives = 217/310 (70%) Query: 213 GYGLMRTMRKSLGGEPHDALQVAREIADGNLMVRVPVAGHDQASMMAAMREMRDKLIEVV 272 G + R ++ LGGEP+ A VA IA G+L V + + DQ SM+ AMREMRD L +V Sbjct: 209 GVLITRNLKGQLGGEPNYAAGVAARIAAGDLTVAIDLRSKDQTSMLFAMREMRDSLASIV 268 Query: 273 GVVNHNAQAVAAASQEIAHGHHDLSERTEIQASSLQQTTASMGELSSKVRYTAEQSALAC 332 V + AS +IA G+ DLS RTE QAS+L++T +SM E++S V+ AE S A Sbjct: 269 SQVRSGTDTITTASGQIAAGNLDLSSRTEEQASALEETASSMEEITSTVKQNAENSQQAS 328 Query: 333 RLSEQAADATRSGREVVERVITQMQDIDTSSGKIVDIISVIEGLAFQTNILALNAAVEAA 392 L+ A+ G VV +V+ M I SS KIVDII VI+G+AFQTNILALNAAVEAA Sbjct: 329 TLAVHASSTAIRGGAVVSQVVDTMGSITESSRKIVDIIGVIDGIAFQTNILALNAAVEAA 388 Query: 393 RAGEQGRGFAVVATEVRTLAQRSAAASREIKQLILASVDSSAAASKLSREAGAAMQQVVQ 452 RAGEQGRGFAVVA+EVR+LAQRSA+A++EIKQLI SV+ A SKL +AG M+++V Sbjct: 389 RAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIGDSVEKVDAGSKLVEQAGTTMKEIVG 448 Query: 453 SIDRVSAVMNDISSANQEQSTGIGEVNQALIQLDDLTQKNAALVEEATAASIFLKDKASE 512 I RV+ +M+DI++A +EQS GI +VNQA+ Q+D++TQ+NAALVEEA AAS L+D+A+ Sbjct: 449 GIQRVADIMSDITAAGREQSAGIEQVNQAIAQMDEVTQQNAALVEEAAAASQSLQDQATH 508 Query: 513 LKRSVLTFQL 522 L V F+L Sbjct: 509 LSEIVSVFKL 518 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 258 bits (658), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 165/362 (45%), Positives = 238/362 (65%), Gaps = 5/362 (1%) Query: 162 LSQLQAAIKALIDFQTARNQQLQQQSQRDSTRGRWLMAACFLACILFAGGAGYGLMRTMR 221 ++ ++A + ALID + ++ ++SQ R + + +L AG + L+R + Sbjct: 155 ITPVRAGVAALIDLELREAKKAFEESQTRFVMVRNISIGAIIFGVLLAGFMAFWLIRLIA 214 Query: 222 KSLGGEPHDALQVAREIADGNLMVRVPV-AGHDQASMMAAMREMRDKLIEVVGVVNHNAQ 280 + L HDA+Q+AR +A G+L ++ V + ++ ++ A+++M D L + V V + Sbjct: 215 RPL----HDAVQIARSVAAGDLTQQIHVNSTNETGQLLQALKDMNDSLSKTVSAVRRGTE 270 Query: 281 AVAAASQEIAHGHHDLSERTEIQASSLQQTTASMGELSSKVRYTAEQSALACRLSEQAAD 340 + AS EIA G+ DLS RTE QA SL++T +SM EL+S VR A+ + A +L A + Sbjct: 271 TITVASGEIASGNADLSSRTEAQAGSLEETASSMEELTSTVRQNADNARQANQLVVSATE 330 Query: 341 ATRSGREVVERVITQMQDIDTSSGKIVDIISVIEGLAFQTNILALNAAVEAARAGEQGRG 400 G VV V+ M I SS KIVDII VI+ +AFQTNILALNAAVEAARAGEQGRG Sbjct: 331 VAVKGGSVVSEVVITMGSIKDSSRKIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRG 390 Query: 401 FAVVATEVRTLAQRSAAASREIKQLILASVDSSAAASKLSREAGAAMQQVVQSIDRVSAV 460 FAVVA+EVR LAQRSA A++EIK LI SV A SKL +AG+ MQ++V S+ V+ + Sbjct: 391 FAVVASEVRNLAQRSAGAAKEIKALIDDSVHKVDAGSKLVDQAGSTMQEIVTSVKHVADI 450 Query: 461 MNDISSANQEQSTGIGEVNQALIQLDDLTQKNAALVEEATAASIFLKDKASELKRSVLTF 520 M++I+SA+QEQS GI +VNQA+ Q+D++TQ+NAALVE+A AA+ ++D+A EL +V F Sbjct: 451 MSEITSASQEQSDGIEQVNQAISQMDEMTQQNAALVEQAAAAAQSMQDQAVELSGAVAIF 510 Query: 521 QL 522 +L Sbjct: 511 KL 512 >gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 538 Score = 256 bits (654), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 159/333 (47%), Positives = 226/333 (67%), Gaps = 5/333 (1%) Query: 195 RWLMAACFLACILFAGGA-----GYGLMRTMRKSLGGEPHDALQVAREIADGNLMVRVPV 249 R+L +A +L AG G+ L+R++ LGGEP A Q+ R IA G+L + Sbjct: 181 RYLTIRNVIATVLGAGAVAATLLGFLLVRSVYAQLGGEPQYAAQIVRRIAGGDLSATIIT 240 Query: 250 AGHDQASMMAAMREMRDKLIEVVGVVNHNAQAVAAASQEIAHGHHDLSERTEIQASSLQQ 309 D+ S++AAM++M+ L + VG + + +A AS +IA G+ DLS RTE QASSL++ Sbjct: 241 RKGDRNSLLAAMQDMQQNLAKTVGDIRRASDTIATASGQIAAGNIDLSARTEQQASSLEE 300 Query: 310 TTASMGELSSKVRYTAEQSALACRLSEQAADATRSGREVVERVITQMQDIDTSSGKIVDI 369 T +SM EL++ V+ A + A +L+ A+D G VV +V+T M I S+G+I DI Sbjct: 301 TASSMEELTATVKQNAGHAQQANQLAVSASDIAVQGNTVVAQVVTTMDSISASAGRIGDI 360 Query: 370 ISVIEGLAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAASREIKQLILAS 429 I VI G+AFQTNILALNAAVEAAR GEQGRGFAVVATEVR+LAQRSA A++EIK LI S Sbjct: 361 IGVINGIAFQTNILALNAAVEAARVGEQGRGFAVVATEVRSLAQRSAEAAKEIKSLIDDS 420 Query: 430 VDSSAAASKLSREAGAAMQQVVQSIDRVSAVMNDISSANQEQSTGIGEVNQALIQLDDLT 489 ++ A + L +AG+ M ++V SI +V+ +M +I++A++EQ+ GI +VNQA+ Q+D +T Sbjct: 421 LEKVGAGATLVDQAGSTMNEIVASIGQVTDIMGEITTASREQTAGIEQVNQAIGQMDRVT 480 Query: 490 QKNAALVEEATAASIFLKDKASELKRSVLTFQL 522 Q+NAALVEEA AA+ L+++A L + V F+L Sbjct: 481 QQNAALVEEAAAAAGSLQEQACSLVQVVSVFKL 513 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 256 bits (653), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 201/532 (37%), Positives = 298/532 (56%), Gaps = 42/532 (7%) Query: 9 RPLPLALRIALTFGTLLLLCVLAGAIGLWQLHLVGSKLDAVVNDGNRNLALAQDLSQQVH 68 + L + +R+ + FG LL+L +G+ +L V +K ++ + LAQ + + Sbjct: 4 KNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDV-AKATVLMEEATIKERLAQQWIKGIE 62 Query: 69 IG-VESF---------QSVIIISDKAAAEAAMQRGGAAHERFIT--QRKALLEAVSDQQT 116 V +F Q I+ + +A AA+ + E + + K LL V++++ Sbjct: 63 TNTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKKLLATVAEKRA 122 Query: 117 RGLVETIFAINDQRAEPAFGRFVQLSMTGQREEAGAWL----ATQLNPALSQLQAAIKAL 172 T AI D + RE GA L A ++ PA +++A+ Sbjct: 123 -----TYTAIRD-------------DVMNLREARGAELQNAIANKMKPAADAYIQSVEAV 164 Query: 173 IDFQTARNQQLQQQSQRDSTRGRWLMAACFLACILFAGGAGYGLMRTMRKSLGGEPHD-A 231 ++ Q + + + R L+ L + + L R++ K P D A Sbjct: 165 VNAQINNFEDAKGRVDTIYQSARMLLIVLGLVALTLGIVLAWMLTRSITK-----PLDYA 219 Query: 232 LQVAREIADGNLMVRVPVAGHDQAS-MMAAMREMRDKLIEVVGVVNHNAQAVAAASQEIA 290 + VAR +A G+L R+ V D+ ++ A+++M D L + V +A AS +IA Sbjct: 220 VSVARLVASGDLTGRITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIA 279 Query: 291 HGHHDLSERTEIQASSLQQTTASMGELSSKVRYTAEQSALACRLSEQAADATRSGREVVE 350 G+ DLS RTE QASSL++T +SM EL+S V+ A+ + A +L+ A+ G VV Sbjct: 280 SGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVS 339 Query: 351 RVITQMQDIDTSSGKIVDIISVIEGLAFQTNILALNAAVEAARAGEQGRGFAVVATEVRT 410 +V+ M I+TS+ KIVDII VI+G+AFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+ Sbjct: 340 KVVDTMDGINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRS 399 Query: 411 LAQRSAAASREIKQLILASVDSSAAASKLSREAGAAMQQVVQSIDRVSAVMNDISSANQE 470 LAQRSAAA++EIK LI SVD SKL EAG M +VV S+ RV+ +M +I +A+QE Sbjct: 400 LAQRSAAAAKEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQE 459 Query: 471 QSTGIGEVNQALIQLDDLTQKNAALVEEATAASIFLKDKASELKRSVLTFQL 522 QS GI +VNQA+ Q+D +TQ+NAALVEEA AA+ L ++A+ L ++V F+L Sbjct: 460 QSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKL 511 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.127 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 679,154 Number of extensions: 20790 Number of successful extensions: 152 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 118 Number of HSP's successfully gapped: 14 Length of query: 526 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 440 Effective length of database: 716,977 Effective search space: 315469880 Effective search space used: 315469880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)