BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4366.p (262 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 93 1e-20 gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 92 2e-20 gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protei... 80 7e-17 gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 80 1e-16 gi|134094008|ref|YP_001099083.1| short chain dehydrogenase [Herm... 76 2e-15 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 92.8 bits (229), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 120/243 (49%), Gaps = 8/243 (3%) Query: 7 KVAVVTGGATLIGAGVVARLRSYGVKV--ALFDIDADGGQRVAGEDRSACRF--WRVDIT 62 ++A+VTGG +G + +L + G +V + G+ +A S F + D++ Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLATMKASGYDFRAYPCDVS 62 Query: 63 DDAQVSHAVEEVAAHFGRLDFLVNLAASYLD-DGAASSRQDWLKTLDVNLVSAVMAAHAV 121 D V + G +D LVN A D + DW + NL S V Sbjct: 63 DYDSAQQCVALIKKEIGEIDVLVNNAGITRDMTFKKMEKTDWDAVMGTNLDSVFNMTKPV 122 Query: 122 RPYLVKGGGGAIVNFTSISSKVAQTGRWLYPVSKAALVQVTRNMAMDFAGDAIRVNSVSP 181 +V+ G G I+N +S++++ G+ Y +KA + T+ +A++ A A+ VN++SP Sbjct: 123 CDGMVERGWGRIINISSVNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTISP 182 Query: 182 GWTWSRVMDELTGGDRAKTDRVAADFHLLKRVGNPEEVADVVAFLLSGHASFVTGADYAV 241 G+ +++ +T + D + R+G PEEVA +VA+L S A+FVTGA+ A+ Sbjct: 183 GYIGTKM---VTAIPQDVLDTKIVPQIPMGRLGKPEEVAGLVAYLASDEAAFVTGANIAI 239 Query: 242 DGG 244 +GG Sbjct: 240 NGG 242 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 92.4 bits (228), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 9/245 (3%) Query: 3 DLEGKVAVVTGGATLIGAGVVARLRSYGVKVALFDIDADGGQRVAGEDRSACRFWRVDIT 62 +L G+VA+VTG + IG + L GVKV G ++ + + +D+ Sbjct: 5 ELAGQVALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESGKGVVLDVN 64 Query: 63 DDAQVSHAVEEVAAHFGRLDFLVNLAASYLDDGAASSR-QDWLKTLDVNLVSAVMAAHAV 121 D A+ ++E+ FG + LVN A D A + ++W + NL S + AV Sbjct: 65 DAARSVALIDEIQKEFGTVTILVNNAGITQDQLAMRMKDEEWDSVIATNLTSVGRLSRAV 124 Query: 122 RPYLVKGGGGAIVNFTSISSKVAQTGRWLYPVSKAALVQVTRNMAMDFAGDAIRVNSVSP 181 ++K G I+N TS+ G+ Y +KA + ++R +A + I VN V+P Sbjct: 125 LRGMMKAKHGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNCVAP 184 Query: 182 GWTWSRVMDELTGGDRAKTDRVAADFHL--LKRVGNPEEVADVVAFLLSGHASFVTGADY 239 G+ + + L+ +++A L R+G PE++A V+FL S AS++TG Sbjct: 185 GFIDTDMTKTLS------EQQISALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTTL 238 Query: 240 AVDGG 244 V+GG Sbjct: 239 HVNGG 243 >gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Herminiimonas arsenicoxydans] Length = 239 Score = 80.5 bits (197), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 98/188 (52%), Gaps = 12/188 (6%) Query: 60 DITDDAQVSHAVEEVAAHFGRLDFLVNLAASYLD---DGAASSRQDWLKTLDVNLVSAVM 116 DITD A+ + E G + LVN A + D G S++ W +DV+L Sbjct: 59 DITD-AEATKVALETLLEAGPVQVLVNNAGIHSDAVFPGMTSAQ--WHSVIDVSLHGFFN 115 Query: 117 AAHAVRPYLVKGGGGAIVNFTSISSKVAQTGRWLYPVSKAALVQVTRNMAMDFAGDAIRV 176 + +++ G I+N +SI++ G+ Y +K AL T+++A++ A I V Sbjct: 116 VTQPLTMPMIRTRWGRIINVSSIAAVTGNRGQVNYSAAKGALHSATKSLALELASRGITV 175 Query: 177 NSVSPGWTWSRVMDELTGGDRAKTDRVAADFHLLKRVGNPEEVADVVAFLLSGHASFVTG 236 N+V+PG + +++E A D+ + +KR G PEEVAD++ FL S +A++++G Sbjct: 176 NAVAPGIIATGMIEE------AFDDKAIQNIVPMKRAGKPEEVADLIGFLASPNAAYISG 229 Query: 237 ADYAVDGG 244 +++GG Sbjct: 230 QIISINGG 237 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 80.1 bits (196), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 116/240 (48%), Gaps = 8/240 (3%) Query: 7 KVAVVTGGATLIGAGVVARLRSYGVKVAL-FDIDADGGQRVAGEDRSACRFWRVDITDDA 65 K A+V+GG +GA + LRS G VA+ + +AD W D++D A Sbjct: 3 KTALVSGGTRGLGAAIAIYLRSAGYAVAVTYHHNADTAAEFRKNTSIPVFCW--DVSDYA 60 Query: 66 QVSHAVEEVAAHFGRLDFLVNLAASYLDDGAAS-SRQDWLKTLDVNLVSAVMAAHAVRPY 124 Q + +V G +D LVN A D + W++ ++ NL S + V Sbjct: 61 QCQEGIRQVELDVGPIDILVNNAGITRDAVLHHMTPGQWIEVINTNLGSVFNMSRNVIEG 120 Query: 125 LVKGGGGAIVNFTSISSKVAQTGRWLYPVSKAALVQVTRNMAMDFAGDAIRVNSVSPGWT 184 + + G I+N +S++ + Q G+ Y +KA + T+++A++ A I VN+++PG+ Sbjct: 121 MRERNFGRIINISSVNGERGQIGQANYAAAKAGIFGFTKSLALESARKNITVNAIAPGYC 180 Query: 185 WSRVMDELTGGDRAKTDRVAADFHLLKRVGNPEEVADVVAFLLSGHASFVTGADYAVDGG 244 + D ++ + +++ + +G ++A +V FL + F+TGA + V+GG Sbjct: 181 DT---DMVSAIPQEVLEKIVTGIP-VGHLGTGSDIARLVVFLADNASGFITGATFDVNGG 236 >gi|134094008|ref|YP_001099083.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 249 Score = 76.3 bits (186), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 94/188 (50%), Gaps = 11/188 (5%) Query: 64 DAQVSHAVEEVAAHFGRLDFLVNLAASYLDDGAASSRQD---WLKTLDVNLVSAVMAA-H 119 +A + E V G L LVN A L+ + D + N+V + + A Sbjct: 65 EADILRMFETVDRELGPLTALVN-NAGILEQQMRVDQMDAARMQRIFTTNIVGSFLCARE 123 Query: 120 AVR--PYLVKGGGGAIVNFTSISSKVAQTGRWL-YPVSKAALVQVTRNMAMDFAGDAIRV 176 AVR L G GGAIVN +S++++ G ++ Y SK A+ +T +A + A + IRV Sbjct: 124 AVRRMSTLHGGAGGAIVNVSSVAARTGGPGEYVDYAASKGAIDTLTIGLAKEVATEGIRV 183 Query: 177 NSVSPGWTWSRVMDELTGGDRAKTDRVAADFHLLKRVGNPEEVADVVAFLLSGHASFVTG 236 N+V PG ++ + +GG+ + DRV + ++R G EVA V +LLS AS+ TG Sbjct: 184 NAVRPGVIYTEI--HASGGEPGRVDRVKGNVP-MQRGGEANEVAQAVLWLLSDKASYTTG 240 Query: 237 ADYAVDGG 244 V GG Sbjct: 241 TLLDVTGG 248 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 534,373 Number of extensions: 21873 Number of successful extensions: 111 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 95 Number of HSP's successfully gapped: 10 Length of query: 262 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 182 Effective length of database: 736,747 Effective search space: 134087954 Effective search space used: 134087954 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)