BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4363.p
         (265 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095846|ref|YP_001100921.1| hypothetical protein HEAR2678 [...    62   4e-11

>gi|134095846|ref|YP_001100921.1| hypothetical protein HEAR2678
           [Herminiimonas arsenicoxydans]
          Length = 233

 Score = 61.6 bits (148), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 106/249 (42%), Gaps = 27/249 (10%)

Query: 24  RVVDLTQTLSPSFPA---LQLPPQFGQVQGFKIERISHYDEAGPAWYWNNF-SCGEHTGT 79
           R+VDLT TL+ + PA    Q P     +   K + +          +   F S  +H  T
Sbjct: 4   RIVDLTLTLTDNMPAHKMFQRPIIAPHLTHEKSKALGLGVPGDSLTFATTFISTLDHIAT 63

Query: 80  HFDAPVHWISGRDHPGNSVDTIAPGNFVAPAVVIDASAAVAANEDWLLDVPFLEQWEARH 139
           H DA  H     +  G SVD +    F+  AV  D +      +   +DV  LE+ E + 
Sbjct: 64  HVDAFFH----TNPDGLSVDKMPLEMFMGKAVCFDMTHIPDLGD---IDVADLEEAERKT 116

Query: 140 GAIPAGAWVLLRTDWSHR-VNDAAAFLNLREDGAHTPGPTQAAVEWLIHQ-RRVHGFGVE 197
           G    G  VLL T    R   D     +        PG T  A  WL  +  ++HG  VE
Sbjct: 117 GVKVDGHIVLLNTGLHKRHYPDIKVVWS-------NPGLTTEATHWLADRGSKLHG--VE 167

Query: 198 TINTDAGQSYAWPLPYPCHTLMHGANRYGLQCLCNLDQLPPQGALIFSAP-LKIEGGSGS 256
             +TD      +P    C     G   Y  + L NL++L  +G  +F  P LKI+ GSGS
Sbjct: 168 GPSTDKPSHNLFPSHRVCRD--RGITHY--EWLVNLEELVGKGEFMFYGPPLKIDNGSGS 223

Query: 257 PLRVLALVE 265
           P+R  A++E
Sbjct: 224 PVRAWAVLE 232


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 535,656
Number of extensions: 21966
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 185
Effective length of database: 736,747
Effective search space: 136298195
Effective search space used: 136298195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)