BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4357.p (773 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093305|ref|YP_001098380.1| putative NADH:FMN flavin oxidor... 278 5e-76 gi|134095710|ref|YP_001100785.1| putative FMN oxidoreductase [He... 261 8e-71 gi|134094653|ref|YP_001099728.1| N-ethylmaleimide reductase, FMN... 122 5e-29 >gi|134093305|ref|YP_001098380.1| putative NADH:FMN flavin oxidoreductase [Herminiimonas arsenicoxydans] Length = 370 Score = 278 bits (712), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 148/340 (43%), Positives = 210/340 (61%), Gaps = 2/340 (0%) Query: 409 PLLTPFQVREIKLENRVVVSPTLLYAAREGVPGDFHLVHLGARALGGAGLLLTEATAVSP 468 PL +P+ +R + L NR+VVSP Y+A G ++H++HLG AL GAG+L+ EATAV P Sbjct: 3 PLFSPYTLRSLTLPNRIVVSPMCQYSANNGAATEWHMIHLGHLALSGAGMLMIEATAVEP 62 Query: 469 EARMTPGCPGLWNEEQQKAWAKVVDFVHRNSQARIGIQFNHAGRRGSTQLGWEQPDR-PL 527 E R+TP GLW++ + A V+ + ++S+ + +Q HAGR+ S+++ WE + + Sbjct: 63 EGRITPKDLGLWDDATEAALVPVLAAIRKHSKIAVVMQLGHAGRKASSKVPWEGGQQLSV 122 Query: 528 ASGNWPLVSASALPYLEGVSQVPAAASIEQLAQIREDFVAAARRAAAAGFDWLELQAGHG 587 A G W + SA+ EG + P A L ++R+ FV AA+RA G D LE+ A HG Sbjct: 123 ADGGWMSYAPSAVSQKEGEVE-PLALDAAGLRRLRDAFVLAAKRAERLGIDGLEVHAAHG 181 Query: 588 CLLSSFLSPLTNARQDQYGGSLPNRLRYVLEVVQAVRAVWPAQLPLSVRISATDWAAGGT 647 LL FLSP+ N R D+YGGSL NR+R+ LEV AVRAV+PA P+ +R+SATDW G Sbjct: 182 YLLHQFLSPIANHRTDEYGGSLENRMRFPLEVFDAVRAVFPADKPVGIRVSATDWMENGW 241 Query: 648 TVDEAVEIARQLHAQGADVIDVSSGEVTPAQKPVYGRMFQTPFADRIRNEAGVPTIAVGA 707 +++ + A +L + D IDVSSG ++P QK G +Q FA ++ GV T+AVG Sbjct: 242 NLEQTIAFAAELKKRDVDWIDVSSGGISPLQKITIGPGYQVAFAQGVKEATGVNTMAVGL 301 Query: 708 ITEADQVNGIVASGRADLCALSRPFLADPAWLLHESARQG 747 ITE Q I+ASG+AD A++R L DP W H +A G Sbjct: 302 ITEPQQAEEIIASGKADFIAMARGILYDPRWPWHAAAALG 341 >gi|134095710|ref|YP_001100785.1| putative FMN oxidoreductase [Herminiimonas arsenicoxydans] Length = 368 Score = 261 bits (667), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 148/349 (42%), Positives = 210/349 (60%), Gaps = 4/349 (1%) Query: 410 LLTPFQVREIKLENRVVVSPTLLYAAREGVPGDFHLVHLGARALGGAGLLLTEATAVSPE 469 L P ++R+IKL NR+ + P Y+A++G+P +H VH G+RA+GGAGL++ EATAVS + Sbjct: 4 LFEPLKLRDIKLRNRIGIPPMCQYSAQDGMPSAWHTVHYGSRAIGGAGLMILEATAVSED 63 Query: 470 ARMTPGCPGLWNEEQQKAWAKVVDFVHRNSQARIGIQFNHAGRRGSTQLGW-EQPDRPLA 528 R++ G G+W + + + + F N A IQ HAGR+ LGW EQ P Sbjct: 64 GRISTGDLGIWKDAHIEPLSHIARFATENECA-AAIQLAHAGRKAGVALGWQEQGSLPPN 122 Query: 529 SGNWPLVSASALPYLEGVSQVPAAASIEQLAQIREDFVAAARRAAAAGFDWLELQAGHGC 588 G W + S + + + P ++ ++ I F +AARRA AAGF +E+ A HG Sbjct: 123 EGGWRTHAPSPIAFGPKFA-TPVELNVNEITTIVATFASAARRALAAGFPVIEIHAAHGY 181 Query: 589 LLSSFLSPLTNARQDQYGGSLPNRLRYVLEVVQAVRAVWPAQLPLSVRISATDWAAGGTT 648 LL FLSPL+N R D YGGS NR R + EV+ +VRAVWP +LP+ VR+SATDWA G Sbjct: 182 LLHQFLSPLSNKRTDDYGGSFINRTRMLREVITSVRAVWPDRLPMLVRLSATDWADHGWN 241 Query: 649 VDEAVEIARQLHAQGADVIDVSSGEVTPAQKPVYGRMFQTPFADRIRNEAGVPTIAVGAI 708 ++E +E+ RQ+ G D++DVSSG + P G +QT F+ RIR E+G+ T AVG I Sbjct: 242 IEETIELCRQMAPLGVDLVDVSSGGLVPDVTVPEGPGYQTEFSARIRRESGMRTSAVGMI 301 Query: 709 TEADQVNGIVASGRADLCALSRPFLADPAWLLHESARQGWRQVSWPAAY 757 T +Q + ++ S +ADL + R L DP W LH + G+ + WPA Y Sbjct: 302 TSPEQADHVIRSEQADLVLIGREILRDPYWPLHAARALGF-SIEWPAQY 349 >gi|134094653|ref|YP_001099728.1| N-ethylmaleimide reductase, FMN-linked [Herminiimonas arsenicoxydans] Length = 352 Score = 122 bits (307), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 109/340 (32%), Positives = 161/340 (47%), Gaps = 40/340 (11%) Query: 410 LLTPFQVREIKLENRVVVSPTLLYAAREG--VPGDFHLVHLGARALGGAGLLLTEATAVS 467 L TP +V +I L NRV+++P A G VP D + + RA AGL+L+EATAV+ Sbjct: 5 LFTPIKVGDITLPNRVIMAPLTRSRAVGGGRVPNDLMVEYYVQRA--SAGLILSEATAVT 62 Query: 468 PEARMTPGCPGLWNEEQQKAWAKVVDFVHRNSQARIGIQFNHAGRRGSTQ-LGWEQPDRP 526 P+ PG+W++EQ W KV D VH+ + I +Q H GR L E P P Sbjct: 63 PQGVGYADTPGIWSDEQVAGWKKVTDAVHK-AGGLISLQLWHVGRISHPMFLNGELPVAP 121 Query: 527 LA---SGNWPLVSASALPYLEGVSQVPAAASIEQLAQIREDFVAAARRAAAAGFDWLELQ 583 A G+ +V P + V+ P A ++++ I + A A AGFD +E+ Sbjct: 122 SAIQPEGHVSIVR----PQVGYVT--PRALELDEIPGIVAAYRKGAENAKLAGFDGVEVH 175 Query: 584 AGHGCLLSSFLSPLTNARQDQYGGSLPNRLRYVLEVVQAVRAVWPA---QLPLSVRISAT 640 +G LL FL TN R D YGGS+ NR R +LEVV VW A L L+ R + Sbjct: 176 GANGYLLDQFLQSSTNQRTDIYGGSIENRARLMLEVVDVCIEVWGAGRVGLHLAPRGDSH 235 Query: 641 DWAAGGTTVDEAVEIARQLHAQGADVI----DVSSGEVTPAQKPVYGRMFQTPFADRIRN 696 D + T + +A ++ +G I + + P K +G ++ I N Sbjct: 236 DL-SDATPAETFGYVAAEMGKRGIAFICARESLGENRLGPQLKKAFGGVY-------IAN 287 Query: 697 EAGVPTIAVGAITEADQVNGIVASGRADLCALSRPFLADP 736 E +T+ N ++A+G AD A + F+A+P Sbjct: 288 E---------QMTKETAAN-VIATGEADAVAFGKLFIANP 317 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,497,898 Number of extensions: 60643 Number of successful extensions: 218 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 212 Number of HSP's successfully gapped: 3 Length of query: 773 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 684 Effective length of database: 707,092 Effective search space: 483650928 Effective search space used: 483650928 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)