BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4355.p
         (311 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093623|ref|YP_001098698.1| putative 5-oxopent-3-ene-1,2,5-...   120   1e-28
gi|134094428|ref|YP_001099503.1| putative 5-carboxymethyl-2-hydr...    99   4e-22
gi|134094091|ref|YP_001099166.1| putative fumarylacetoacetate hy...    94   6e-21

>gi|134093623|ref|YP_001098698.1| putative
           5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase
           [Herminiimonas arsenicoxydans]
          Length = 255

 Score =  120 bits (300), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 122/227 (53%), Gaps = 25/227 (11%)

Query: 77  NVKLLAPIPRPRKNIFGIGLNYVEHVEESSRTLDTSKDLPKQPVIFSKPPTTVIGQGDAI 136
           +VK+L P  +P K I  +  N+     E ++ L+ +   P +P+   K P + +  G+ I
Sbjct: 46  DVKVLMP-AQPTK-IIAMWNNF----HELAKKLNLAD--PVEPLYLIKAPNSYLNPGETI 97

Query: 137 EHNQAITRQMDWEVELAVIIGKQAKGVSQASALDYVFGYSVMNDISA-----RDNRRAGQ 191
           +       ++ +E EL ++IGK AK VS+A A+DYVFGY+V ND++      RD   A Q
Sbjct: 98  QK-PPTDDKVVFEGELGIVIGKTAKAVSEADAMDYVFGYTVANDVTVATILNRDESFA-Q 155

Query: 192 WIYSKGQDTYAPFGPVIVTADEIPDPHNLDLSLTVNGVTKQSSNTRHMLFKVDTLIADIS 251
           W+ +KG DT+ PFGP I T     DP  L +   +NG  +Q+     M F    L++ IS
Sbjct: 156 WVRAKGLDTFCPFGPTIATD---LDPTTLVVKTVLNGDVRQNYPISDMRFSTQQLVSMIS 212

Query: 252 AGITLEPGDIIATGTPAGVGAGRSPQEWMWPGDVVVATVEKIGSLRN 298
           A +TL PGDII  GT  GVG+       M PG VV   +  IG L N
Sbjct: 213 ADMTLFPGDIILCGTSVGVGS-------MKPGSVVEVEIAGIGKLVN 252


>gi|134094428|ref|YP_001099503.1| putative
           5-carboxymethyl-2-hydroxymuconate delta-isomerase
           [Herminiimonas arsenicoxydans]
          Length = 264

 Score = 98.6 bits (244), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 111/223 (49%), Gaps = 21/223 (9%)

Query: 87  PRKNIFGIGLNYVEHVEESSRTLDTSKDLPKQPVIFSKPPTTV--IGQGDAIEH-NQAIT 143
           P + I+ IG NY  H  E     D +++    P  F KP  ++  I  G  ++H    +T
Sbjct: 55  PVRRIYCIGRNYAAHAREMGS--DPTRE---PPFFFQKPSDSIQYIAPGKTVDHPYPTLT 109

Query: 144 RQMDWEVELAVIIGKQAKGVSQASALDYVFGYSVMNDISARDNRRAGQ-----WIYSKGQ 198
           +   +E+EL   I K  K +   +AL +VFGY+V  D++ RD + A +     W   K  
Sbjct: 110 KNYHYEIELVAAISKGGKNIPVETALQHVFGYAVGLDMTRRDLQAAMKKEEKPWEIGKSF 169

Query: 199 DTYAPFGPVIVTADEIPDPHNLDLSLTVNGVTKQSSNTRHMLFKVDTLIADISAGITLEP 258
           D  AP GP+   A  I +     + L VNG  KQSS+   M++ V   I+++S    L+P
Sbjct: 170 DMSAPIGPLHPVAS-IGNFTQGKIWLKVNGQVKQSSDLNKMIWSVAEQISNLSKAFELQP 228

Query: 259 GDIIATGTPAGVGAGRSPQEWMWPGDVVVATVEKIGSLRNPIV 301
           GDII +GTP  VG        +  GDV+   +E++ S+   +V
Sbjct: 229 GDIIYSGTPENVGP-------VVRGDVMEGYIERLPSISLKVV 264


>gi|134094091|ref|YP_001099166.1| putative fumarylacetoacetate
           hydrolase family protein [Herminiimonas arsenicoxydans]
          Length = 229

 Score = 94.4 bits (233), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 96/192 (50%), Gaps = 15/192 (7%)

Query: 87  PRKNIFGIGLNYVEHVEESSRTLDTSKDLPKQP-VIFSKPPTTVIGQGDAIEHNQAITRQ 145
           P   I+ IG NY  H      T++   D  K+P   F K P  +I   D     +  T  
Sbjct: 25  PVHRIYCIGRNYAAH------TIEMGHDPDKEPPFFFQKNPDNIIVDKDFPYPPE--TSD 76

Query: 146 MDWEVELAVIIGKQAKGVSQASALDYVFGYSVMNDISARD----NRRAGQ-WIYSKGQDT 200
           + +E EL V + K  K ++   ALD++FGY V  D++ RD     ++ G+ W   K  + 
Sbjct: 77  VHFEFELVVALAKGGKNITVEKALDHIFGYGVGLDMTRRDLQGVAKKMGRPWEVGKAFEH 136

Query: 201 YAPFGPVIVTADEIPDPHNLDLSLTVNGVTKQSSNTRHMLFKVDTLIADISAGITLEPGD 260
            AP   +I  AD +  PH   +   VNG  +Q  +   M++KV   I+ +S    L+PGD
Sbjct: 137 SAPCSALIPVAD-VGHPHKGGIWFKVNGEVRQKGDLDQMIWKVAEQISILSTFFELKPGD 195

Query: 261 IIATGTPAGVGA 272
           +I TGTPAGVGA
Sbjct: 196 LIMTGTPAGVGA 207


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 631,440
Number of extensions: 27718
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 3
Length of query: 311
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 229
Effective length of database: 730,157
Effective search space: 167205953
Effective search space used: 167205953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)