BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4353.p
         (252 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094686|ref|YP_001099761.1| maleate cis-trans isomerase pro...   390   e-110

>gi|134094686|ref|YP_001099761.1| maleate cis-trans isomerase
           protein [Herminiimonas arsenicoxydans]
          Length = 249

 Score =  390 bits (1003), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/248 (75%), Positives = 215/248 (86%)

Query: 5   RSYRIGQIVPSSNTTMETEIPAILRARELNLPERFTFHSSRMRMKHVTKEELAAMDGDSD 64
           +++RIGQIVPSSNTTMETEIPAILRARE    ERFTFHSSRMRMK VT+EELAAMD DSD
Sbjct: 2   KTFRIGQIVPSSNTTMETEIPAILRAREAMAQERFTFHSSRMRMKRVTREELAAMDADSD 61

Query: 65  RCALELSDARVDVLGYACLVAIMSMGRGYHRVSEQRLHQRTVDNGGAAPVVTSAGALVDG 124
           RCALELSDARVDVLGYACLVAIMSMGRGYHRVSE RLHQRTV+N G APVVTSAGALV G
Sbjct: 62  RCALELSDARVDVLGYACLVAIMSMGRGYHRVSETRLHQRTVENNGPAPVVTSAGALVHG 121

Query: 125 LHAIGARKVSILTPYMKPLTQLVIDYIENEGIEVVDSISLEIPDNLEVGRQDPRAPIEIT 184
           L  IGA+K++I+TPYMKPLT+LV+DYI++EGIEV+D ISLEI DNL+VG +DP A IEI+
Sbjct: 122 LGKIGAKKIAIITPYMKPLTELVVDYIQHEGIEVLDCISLEIADNLQVGARDPNALIEIS 181

Query: 185 KRLNTSGVDAIVASACVQMPSLASVQAIEDRTGLPVLSSSVATTYMMLKRLELDTTVPGF 244
           KRLN +  DA+V SACVQMPSLAS+Q ++DR GLPVLS++  T Y ML++L L T  P  
Sbjct: 182 KRLNVANCDAVVLSACVQMPSLASLQPVQDRLGLPVLSAAACTAYQMLEKLGLKTISPNA 241

Query: 245 GSLLSGRY 252
           G+LLSG+Y
Sbjct: 242 GALLSGKY 249


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 447,208
Number of extensions: 17078
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 172
Effective length of database: 736,747
Effective search space: 126720484
Effective search space used: 126720484
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)