BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4348.p
         (271 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permeas...    82   3e-17

>gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permease
           [Herminiimonas arsenicoxydans]
          Length = 304

 Score = 82.0 bits (201), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 86/151 (56%), Gaps = 2/151 (1%)

Query: 74  DTLASLQRVLLGLGIAALAGLVLGIANGIFPVLRAGFSPLLTVISMVPPLAILPI-LFIV 132
           + LASL+RV +G G+AAL G+ LG   G F  L   F+P+++++  V PLA LPI L + 
Sbjct: 109 NILASLKRVAVGFGLAALVGIPLGFMIGRFKFLSGMFNPIISLLKPVSPLAWLPIGLLVF 168

Query: 133 LGLDELSKVMLIVIGVTPLLARDLEHTGRAIPAELLIKAQTLGANSWTLVLRVALPQMLA 192
              D  +   + +  + P++        R +P + +  A+ L  + W +V ++  P +L 
Sbjct: 169 KAADPAAIWSIFICSIWPMIINTAVGVQR-VPQDYMNVARVLNLSEWKIVTKILFPSVLP 227

Query: 193 RLLVSLRLSLGAAWLFLISAEAISATAGLGY 223
            +L  +RL++G AWL +++AE ++   G+G+
Sbjct: 228 YMLTGVRLAIGTAWLVIVAAEMLTGGVGIGF 258


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.330    0.145    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 449,820
Number of extensions: 15474
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 2
Length of query: 271
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 191
Effective length of database: 736,747
Effective search space: 140718677
Effective search space used: 140718677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)