BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4347.p (258 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 165 2e-42 gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 152 2e-38 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 151 3e-38 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 133 9e-33 gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting A... 127 6e-31 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 165 bits (418), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 134/222 (60%), Gaps = 11/222 (4%) Query: 1 MSYIDIRNVWQQYDQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQL 60 M+ ++IRN+ +++ N V++ ++L +E G+F TL+G SGCGK+T LR++ G + P G++ Sbjct: 1 MALLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKI 60 Query: 61 LLQGQPFPAEPDATRGV--VFQRYSVFPHLNVLDNVAIGLELPQAPLLGRLFGGSKRRAR 118 LL G P R V VFQ Y++FPH+ V N+A LE+ P K + Sbjct: 61 LLDGVDLTGVPPEQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTP---------KSEIK 111 Query: 119 EQAAQLLHRVGLGHALNLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKE 178 ++ + L V L YP LSGG +QR++IA+AL+ RP++LLLDEP ALD +R++ Sbjct: 112 QKVDEALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQ 171 Query: 179 MHTLLLDLWQDSGLTVFMVTHDLSEGFTLGTRLLVFDKVRVD 220 M L++L ++ G+T VTHD +E L R+ V +K ++ Sbjct: 172 MQIELINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIE 213 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 152 bits (383), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 90/216 (41%), Positives = 127/216 (58%), Gaps = 11/216 (5%) Query: 3 YIDIRNVWQQYDQNV----VLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKG 58 +IDI++ + L +NL V +G+F TL+G SGCGKST L L+ G + S G Sbjct: 8 FIDIQHAEMSFHTKKGVFNALTDINLTVAKGEFITLIGHSGCGKSTLLNLIAGLTQ-STG 66 Query: 59 QLLLQGQPFPAEPDATRGVVFQRYSVFPHLNVLDNVAIGLELPQAPLLGRLFGGSKRRAR 118 +LL G A P R VVFQ +S+ P L +NV + +E + G++ G +K RAR Sbjct: 67 GMLLCGNREIAGPSPERAVVFQNHSLLPWLTCYENVYLAVE----RVFGKVEGKAKLRAR 122 Query: 119 EQAAQLLHRVGLGHALNLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKE 178 +AA L VGL HA P+ +SGGM+QR+ IA+AL + P+VLL+DEPFGALD R Sbjct: 123 TRAA--LSLVGLTHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAH 180 Query: 179 MHTLLLDLWQDSGLTVFMVTHDLSEGFTLGTRLLVF 214 + LL + +G TV MVTHD+ E L ++++ Sbjct: 181 LQDELLKIVAATGSTVVMVTHDVDEAVLLSDKIVML 216 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 151 bits (382), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 133/238 (55%), Gaps = 18/238 (7%) Query: 4 IDIRNVWQQYDQNVVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQLLLQ 63 I+++N+ +++ V L ++L G+ L+G SGCGK+T LR++ G E+P GQ+LL Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 64 GQPFPAEPDATR--GVVFQRYSVFPHLNVLDNVAIGLELPQAPLLGRLFGGSKRRAREQA 121 G+ A R G VFQ Y++F H+ V +N+A GL + P R S+ +E+ Sbjct: 63 GEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRV--RPAATR---PSESVIKEKV 117 Query: 122 AQLLHRVGLGHALNLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMHT 181 +LL V L + YP LSGG +QR+A+A+AL V PRVLLLDEPFGALD +RKE+ Sbjct: 118 TKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 182 LLLDLWQDSGLTVFMVTHDLSEGFTLGTRLLVFDKVRV-----------DPQYPQAYG 228 L L + +T VTHD E + ++++ +K V +P P YG Sbjct: 178 WLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYG 235 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 133 bits (334), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 87/217 (40%), Positives = 125/217 (57%), Gaps = 20/217 (9%) Query: 18 VLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQLLLQGQP-----FPAEPD 72 ++ L+ ++ GQ L+G SGCGK+T LR + G E ++G + L G+ F A P+ Sbjct: 33 IVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEGSITLGGKEISNAHFTATPE 92 Query: 73 ATR-GVVFQRYSVFPHLNVLDNVAIGLELPQAPLLGRLFGGSKRRAREQAAQLLHRVGLG 131 + GVVFQ Y++FPHL+V DNV GL AP +R+AR A LL VGL Sbjct: 93 TRQIGVVFQDYALFPHLSVADNVGFGLRKLAAP---------ERQAR--IAALLTLVGLA 141 Query: 132 HALNLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIRKEMHTLLLDLWQDSG 191 +P LSGG QQR+A+A+AL +P +LLLDEPF LD +R+ + + + D+ ++ G Sbjct: 142 SQGKKFPHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVG 201 Query: 192 LTVFMVTHDLSEGFTLGTRLLVF-DKVRVDPQYPQAY 227 T +VTHD E F + ++ V D V V Q+ AY Sbjct: 202 TTAVLVTHDQHEAFAIADQIGVMQDGVIV--QWDSAY 236 >gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting ATPase [Herminiimonas arsenicoxydans] Length = 262 Score = 127 bits (319), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 78/218 (35%), Positives = 117/218 (53%), Gaps = 18/218 (8%) Query: 4 IDIRNVWQQYDQN----VVLERLNLRVEEGQFCTLVGASGCGKSTFLRLLLGQERPSKGQ 59 +D+R V QY R++ +V + L+G SGCGKST L+ + G P++G+ Sbjct: 9 LDVRGVTLQYKTKEHLVTATYRVDFKVYKSDRFVLLGPSGCGKSTLLKAVGGYMMPTEGE 68 Query: 60 LLLQGQPFPAEPDATRGVVFQRYSVFPHL-NVLDNVAIGLELPQAPLL--GRLFGGSKRR 116 + L + +P R +VFQ + P V NV PLL G+L G + Sbjct: 69 MRLHDKVI-TKPWYDRMMVFQEFDQLPPWKTVKQNVMF-------PLLASGKLKG---KE 117 Query: 117 AREQAAQLLHRVGLGHALNLYPSSLSGGMQQRLAIAQALIVRPRVLLLDEPFGALDPGIR 176 A ++A + +V L + YP LSGGM+QR+AIA+ + + P +LL+DEP+ ALD R Sbjct: 118 AEDKAMYYIEKVNLSKFADHYPHMLSGGMKQRVAIARGMAMEPDILLMDEPYAALDALTR 177 Query: 177 KEMHTLLLDLWQDSGLTVFMVTHDLSEGFTLGTRLLVF 214 K+M LL LW D+ TV VTH ++E +G R+L+ Sbjct: 178 KKMQDELLQLWDDTHFTVLFVTHSIAEAVKIGNRILLL 215 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 505,319 Number of extensions: 21187 Number of successful extensions: 199 Number of sequences better than 1.0e-08: 43 Number of HSP's gapped: 136 Number of HSP's successfully gapped: 45 Length of query: 258 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 178 Effective length of database: 736,747 Effective search space: 131140966 Effective search space used: 131140966 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)