BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4343.p (463 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095844|ref|YP_001100919.1| putative amidase [Herminiimonas... 98 1e-21 gi|134093455|ref|YP_001098530.1| aspartyl/glutamyl-tRNA amidotra... 80 2e-16 gi|134096406|ref|YP_001101481.1| putative amidase [Herminiimonas... 60 2e-10 >gi|134095844|ref|YP_001100919.1| putative amidase [Herminiimonas arsenicoxydans] Length = 469 Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 112/403 (27%), Positives = 176/403 (43%), Gaps = 37/403 (9%) Query: 69 PLYGVPFSIKDNIDLAGIATTAACPAF-SYVPRESATLVERLIALGAIPIGKCNLDQFAT 127 PL+G+P S+KD I + G+ T A + + + A V R+ A GA +G +F Sbjct: 73 PLHGLPISVKDLIAVGGVRQTFGSRAMENNIAQVDAPSVARVKAAGACIVGISTTSEFGC 132 Query: 128 GLNGTRSPYGACRNSVHPDYPSGGSSSGSSLAVALGLSSFALGTDTAGSGRVPAALNNLV 187 G G RN + + GGSS G++ +VA G++ FALGTD GS R P++ L Sbjct: 133 KAVGDSPLTGITRNPWNIEKTPGGSSCGAAASVAAGVTPFALGTDGGGSIREPSSFTGLF 192 Query: 188 GLKATKGLLSTAGVVPACRT--LDCVTFFTATAAEASQLLALCARPDERDEYSRANLPHN 245 G+KA + V PA T L V + +A+ LL++ A D RD +S A + Sbjct: 193 GIKAQ---FARVPVFPASATPTLAHVGPLARSVRDAALLLSVIAGHDARDPFSVAEDVPD 249 Query: 246 DASAFQPPRRGFRFGVPRQL-------EFLGCAESPVLFVEAL--EQMEAIGGVAV-PID 295 +A P +G R L E + E+ V EAL E +E GG+ P D Sbjct: 250 FLAACDAPIKGMRLAWSPDLGYAKPDAEIVRITEAAVKKFEALGCEIIELKGGIGSDPAD 309 Query: 296 FTPFLEAARLLYEGPWVAERYSTV----EALLKEQPEEVLPVIRDVLRKAPQYSAVDTFR 351 W+AE Y+ V +++++Q E + PV+ L KA S + + Sbjct: 310 M--------------WLAEFYAGVGTRLHSVMRDQRELLDPVVVATLDKALDQSLLSYYS 355 Query: 352 AQYRLQQLKADCDRILAGLDCVVTPAYP--RPVTLEELREQPVQRN-SDLGWYTNFMNML 408 + Q + + D ++TP P P ++ Q RN +YT N+ Sbjct: 356 KVFERYQFREKMRSMFTSFDLLLTPTAPIAAPNVGVDVPAQFADRNICSWQYYTYPFNLT 415 Query: 409 DYAAVATPMNFMKNGLPWGITVFGPAFADQALLGMADALQRAH 451 A + P+ F ++GLP G+ + + + A A + H Sbjct: 416 GQPAASLPVGFTQSGLPVGLQLVANINRETDIFRAAAAFEAVH 458 >gi|134093455|ref|YP_001098530.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Herminiimonas arsenicoxydans] Length = 485 Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 104/229 (45%), Gaps = 6/229 (2%) Query: 70 LYGVPFSIKDNIDLAGIATTAACPAF-SYVPRESATLVERLIALGAIPIGKCNLDQFATG 128 L G+P + KD +TA +YV AT+VE G + +GK N D+FA G Sbjct: 66 LTGIPIAHKDIFVTRNWRSTAGSKMLENYVSPFDATVVENFNQAGMVTLGKLNCDEFAMG 125 Query: 129 LNGTRSPYGACRNSVHPDYPSGGSSSGSSLAVALGLSSFALGTDTAGSGRVPAALNNLVG 188 + S +GA +N GGSS GS+ A+A L+ + TDT GS R PAAL + G Sbjct: 126 SSNENSYFGAVKNPWDKTAIPGGSSGGSAAAIAARLTPASTATDTGGSIRQPAALCGVTG 185 Query: 189 LKATKGLLSTAGVVPACRTLDCVTFFTATAAEASQLLALCARPDERDEYSRANLPHNDAS 248 +K T G +S G++ +LD TA + LL DERD S + Sbjct: 186 IKPTYGRVSRFGMIAFASSLDQGGPIAKTAEDCGLLLNAMVSFDERDSTSVERDKEDFTR 245 Query: 249 AFQPPRRGFRFGVPRQLEFLGC---AESPVLFVEALEQMEAIGGVAVPI 294 P G + G+PR E+ G A+ AL + E +G V I Sbjct: 246 DLNAPLEGLKIGIPR--EYFGAGLSADVEQAVRAALGEYEKLGATLVDI 292 >gi|134096406|ref|YP_001101481.1| putative amidase [Herminiimonas arsenicoxydans] Length = 437 Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 114/232 (49%), Gaps = 13/232 (5%) Query: 6 DLRIDALIA--AYRE--ARLTPRQVVSRLRESASVLNAQYRLYIHLLNEQESEPYLQALE 61 DL + L A A RE A R ++R+ E ++A + H + ++ + L+ Sbjct: 6 DLSLQELAARLARREVSAETVARASIARIEEMEPAVHA----WQH-FDPAQAIAQARRLD 60 Query: 62 ACSPHSLPLYGVPFSIKDNIDLAGIATTAACPAFS-YVPRESATLVERLIALGAIPIGKC 120 A +P L+GVP +KD +D A + TT P ++ + P+ A V GA+ +GK Sbjct: 61 AQAPGGA-LHGVPIGVKDLMDTADMPTTYGSPIYAGHQPQTDAICVAACRNAGAVIMGKT 119 Query: 121 NLDQFATGLNG-TRSPYGACR-NSVHPDYPSGGSSSGSSLAVALGLSSFALGTDTAGSGR 178 +FAT G T +P+ + + + GGSSSGS+ AVA G+ A GT TAGS Sbjct: 120 VTTEFATFHPGPTCNPHRTHKADGTLQVHTPGGSSSGSAAAVACGMVPVAFGTQTAGSIV 179 Query: 179 VPAALNNLVGLKATKGLLSTAGVVPACRTLDCVTFFTATAAEASQLLALCAR 230 PAA +VG K T G+L AG+ +LD V + +A+ + +R Sbjct: 180 RPAAYCGVVGYKPTYGMLPLAGIKSLSPSLDTVGVLARSVGDAAFFIGTLSR 231 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 802,107 Number of extensions: 30818 Number of successful extensions: 90 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 87 Number of HSP's successfully gapped: 4 Length of query: 463 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 378 Effective length of database: 720,272 Effective search space: 272262816 Effective search space used: 272262816 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)