BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4341.p
         (419 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093699|ref|YP_001098774.1| putative response regulator pro...    62   6e-11

>gi|134093699|ref|YP_001098774.1| putative response regulator
           protein [Herminiimonas arsenicoxydans]
          Length = 211

 Score = 62.0 bits (149), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 57/89 (64%)

Query: 328 SGVGPHLTHSIVDILRAQSERLQNLTQELATVRESLEERKLIERAKGVLMMKQGLNEENA 387
           +G+       ++D+  A+    Q L  EL+  +  L ERK IERAKG+LM +  ++E++A
Sbjct: 122 AGLQSERIKPVLDVALARFNAEQKLRTELSDTKLKLAERKTIERAKGLLMERHRISEDDA 181

Query: 388 YRLLRKHAMNQNRRIAEVAQAILSLTEIL 416
           Y  LR+ AM++N +++E+AQ IL + ++L
Sbjct: 182 YTKLRRMAMDKNLKLSELAQRILDVADLL 210


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.132    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 697,459
Number of extensions: 26272
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 335
Effective length of database: 723,567
Effective search space: 242394945
Effective search space used: 242394945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)