BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4339.p (117 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094809|ref|YP_001099884.1| cobalt-zinc-cadmium resistance ... 63 4e-12 gi|134094825|ref|YP_001099900.1| cobalt-zinc-cadmium resistance ... 54 3e-09 gi|134093783|ref|YP_001098858.1| putative periplasmic cation eff... 53 4e-09 >gi|134094809|ref|YP_001099884.1| cobalt-zinc-cadmium resistance protein CzcI [Herminiimonas arsenicoxydans] Length = 119 Score = 62.8 bits (151), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 41/120 (34%), Positives = 60/120 (50%), Gaps = 8/120 (6%) Query: 2 RTLILLLAFLLPVQLSWAAVGSYCQAENDRVPMHLGHHDHPSLKGDEQADYQKSKPGDR- 60 R LI+L+ ++P+QLSWAA YC+ E + +H GHH+H + + SK Sbjct: 3 RLLIILMFVIVPLQLSWAAAAVYCEHETNPKSVHFGHHEHKHIASAAEGKTDVSKSAAAV 62 Query: 61 DMDCSLCHFCAMKSVQAGSTIVIIAPATAQASSP---AHLPHPASHIADGPDKPNWPLAA 117 D DC+ CH + + TI + A A S+P A P AS P++P W +AA Sbjct: 63 DGDCTSCHLGGIAIL----TIPVPAMALDLVSAPSITAGNPLLASSRPSRPERPKWAVAA 118 >gi|134094825|ref|YP_001099900.1| cobalt-zinc-cadmium resistance protein CzcI [Herminiimonas arsenicoxydans] Length = 114 Score = 53.5 bits (127), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 11/108 (10%) Query: 13 PVQLSWAAVGSYCQAENDRVPMHLGHHDHPSLKGDEQADYQKSKPGDRDMDCSLCHFCAM 72 P+Q SWAA +YCQ E + H GHH+H E+++ K K DC CH + Sbjct: 14 PLQFSWAAAAAYCQHEINPATTHYGHHEHKHQASAEKSN-DKEKSAQVHTDCGYCHAVSP 72 Query: 73 KSVQAGSTIVIIAPATAQASSPAHLP-HP---ASHIADGPDKPNWPLA 116 S S + ++ P + HL HP +SHI D P +P+ P+A Sbjct: 73 ASFLEQS-LPLLFPLVS-----LHLELHPLSFSSHIPDSPRRPDRPVA 114 >gi|134093783|ref|YP_001098858.1| putative periplasmic cation efflux system protein czcI [Herminiimonas arsenicoxydans] Length = 119 Score = 53.1 bits (126), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 10/121 (8%) Query: 2 RTLILLLAFLLPVQLSWAAVGSYCQAENDRVPMHLGHHDHPSLKG-DEQADYQKSKPGDR 60 R L++ + ++P QLSWAA YC+ E + +H GHH+H + +E Sbjct: 3 RLLVIFMLVVIPFQLSWAAAAVYCEHEINPTTLHFGHHEHKHIASPNEVKADASKAAAAV 62 Query: 61 DMDCSLCHFCAMKSVQ----AGSTIVIIAPATAQASSPAHLPHPASHIADGPDKPNWPLA 116 D DC+ CH + + A + +I AP ++S AS P++P W +A Sbjct: 63 DGDCTSCHLGGIAILTIPLPALALDIISAPLIISSNSLL-----ASSRPSRPERPKWTVA 117 Query: 117 A 117 Sbjct: 118 V 118 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.132 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 249,667 Number of extensions: 9150 Number of successful extensions: 37 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 36 Number of HSP's successfully gapped: 3 Length of query: 117 Length of database: 1,000,347 Length adjustment: 70 Effective length of query: 47 Effective length of database: 769,697 Effective search space: 36175759 Effective search space used: 36175759 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)