BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4338.p (428 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094810|ref|YP_001099885.1| cobalt-zinc-cadmium resistance ... 376 e-105 gi|134094824|ref|YP_001099899.1| cobalt-zinc-cadmium resistance ... 363 e-101 gi|134093784|ref|YP_001098859.1| divalent cation efflux system p... 362 e-101 >gi|134094810|ref|YP_001099885.1| cobalt-zinc-cadmium resistance protein CzcC [Herminiimonas arsenicoxydans] Length = 432 Score = 376 bits (966), Expect = e-105, Method: Compositional matrix adjust. Identities = 185/366 (50%), Positives = 257/366 (70%) Query: 56 FEQNKTLAAARKEIEAVEATILQAGARPNPEFSALLEDFRKSSRTTTYQITQPIELGGKR 115 + N +A AR+E+EA+E T+ QAG PNPE + L+ED ++ +RTTT QI Q IELGGKR Sbjct: 60 YNANPDIAVARREVEAIEGTVQQAGLIPNPELATLVEDTKRETRTTTVQINQVIELGGKR 119 Query: 116 SARIDAAQRARDMALLDYAVKRTEIRAGVVAAYYDVMVAAERQRLASELLGLANTSAQMT 175 ARI AA+R RD AL+D K+ +IRA V++A+YDV+V ER RLA + LA + + Sbjct: 120 GARISAAERGRDFALMDLTAKQADIRAKVISAFYDVLVGQERIRLAEGSVELAKRATLIA 179 Query: 176 GRRVMAGKISPVEQTKAQVAQSSARLELNEANSDLTVAQKKLATFWGSVGNGFELTDHGV 235 RRVM+GKISPVE+T+A+VA++ R+EL +A ++L A+++LA WG V GFEL ++ Sbjct: 180 SRRVMSGKISPVEETRARVAEAGVRVELAQAVNELETARRQLAATWGGVTPGFELVENTE 239 Query: 236 ESLPPLPAIAQLTEKVASGPTVRLAQLEVERRRALASIETSKRTPDVSLTLGNKRDESNA 295 LP L + +L +++ P + A++EVERR+A+A +E S+R PDV++TLG KRDE Sbjct: 240 SDLPTLWPLPELAQRLQQSPFLLRAKIEVERRKAIAQVERSRRIPDVTVTLGAKRDEQMG 299 Query: 296 RNMWVVGFSVPIPVFDSNKGNELEALKRVDIARDTLSVIEVQMQSEAAQSFERLRNAREE 355 RN V+G S+PIPVFD N+GN LE+L+R D ARD L EV + E Q+ RL + E Sbjct: 300 RNQAVIGLSIPIPVFDRNQGNVLESLRRTDKARDELVATEVNLNMELGQAHGRLSKSLIE 359 Query: 356 ATALRDEIVPAAQSAYQAARTGFELGKFGYLDVLDAQRTYFQAKAQYWKALSTAFQAAAD 415 A ++ EI+P AQS Y A GFELGKF +L+VLDAQRT+FQAK+QY ++L+ ++AA D Sbjct: 360 AELIKTEILPGAQSNYDATTKGFELGKFSFLEVLDAQRTFFQAKSQYLRSLAETYRAATD 419 Query: 416 LDRLAG 421 +DRL G Sbjct: 420 IDRLLG 425 >gi|134094824|ref|YP_001099899.1| cobalt-zinc-cadmium resistance protein CzcC [Herminiimonas arsenicoxydans] Length = 435 Score = 363 bits (931), Expect = e-101, Method: Compositional matrix adjust. Identities = 203/425 (47%), Positives = 287/425 (67%), Gaps = 6/425 (1%) Query: 1 MYRHSFLLGLALLAAGSSQAQSIAPSTTQYNPPSTASALDKET----RLLSLPAAISLAF 56 M+R+ F LG+A + + AQ++ +T + P+ A A T ++L A++LA Sbjct: 1 MHRYFFALGMAAITLMPAFAQTVDGATRAF--PNHAGAYSARTVEPATPITLNQALTLAL 58 Query: 57 EQNKTLAAARKEIEAVEATILQAGARPNPEFSALLEDFRKSSRTTTYQITQPIELGGKRS 116 N L+AAR E AV+ATI QAGA PNPE S L+ED R+ +RTTT Q+ Q IELGGKR+ Sbjct: 59 GANAELSAARNEARAVDATIQQAGASPNPELSWLMEDTRRDTRTTTVQLNQAIELGGKRA 118 Query: 117 ARIDAAQRARDMALLDYAVKRTEIRAGVVAAYYDVMVAAERQRLASELLGLANTSAQMTG 176 ARI AA R D A D K +IRA V+ A+++V+ A ER RLA L LA + Sbjct: 119 ARITAASRTFDAANADLDAKNADIRAAVMTAFFEVLTAQERLRLADASLLLAQRGTHVAS 178 Query: 177 RRVMAGKISPVEQTKAQVAQSSARLELNEANSDLTVAQKKLATFWGSVGNGFELTDHGVE 236 RRV AGK+SPVE+T+A+VA+++ RLEL +A ++L A+++L WG+ F + +E Sbjct: 179 RRVAAGKVSPVEETRARVAEANMRLELGQAKNELDNARRRLTASWGNPAPRFVQAEGALE 238 Query: 237 SLPPLPAIAQLTEKVASGPTVRLAQLEVERRRALASIETSKRTPDVSLTLGNKRDESNAR 296 +LP LPA +L + A P + A+LE ERR+A+A +E S+RTPD++++LG KRD+ R Sbjct: 239 TLPHLPAWTELEIRGAQAPVITRARLEFERRQAMAEVENSRRTPDITVSLGVKRDQELGR 298 Query: 297 NMWVVGFSVPIPVFDSNKGNELEALKRVDIARDTLSVIEVQMQSEAAQSFERLRNAREEA 356 N VVG S+P P+FD N+GN LEAL+R D ARD L+ E+++ E AQ++ +L+NAR+E Sbjct: 299 NQAVVGLSIPFPLFDRNQGNMLEALRRTDKARDELAASEIRLDGELAQAWTQLKNARQET 358 Query: 357 TALRDEIVPAAQSAYQAARTGFELGKFGYLDVLDAQRTYFQAKAQYWKALSTAFQAAADL 416 L++EI+P AQSAY+AA GFE GKF +LDVL+AQRT+ QA+AQY ++L A +AAA++ Sbjct: 359 QVLQNEILPGAQSAYEAATKGFEFGKFNFLDVLEAQRTFLQARAQYLRSLFEAHRAAAEI 418 Query: 417 DRLAG 421 DRL G Sbjct: 419 DRLLG 423 >gi|134093784|ref|YP_001098859.1| divalent cation efflux system periplasmic protein CzcC [Herminiimonas arsenicoxydans] Length = 429 Score = 362 bits (929), Expect = e-101, Method: Compositional matrix adjust. Identities = 184/366 (50%), Positives = 255/366 (69%) Query: 56 FEQNKTLAAARKEIEAVEATILQAGARPNPEFSALLEDFRKSSRTTTYQITQPIELGGKR 115 F N +A AR+E +A E +I QAG PNPE L+ED ++ +RTTT QI Q IELGGKR Sbjct: 57 FNANPEIAVARREAQATEGSIQQAGLIPNPELETLVEDSKRETRTTTMQINQTIELGGKR 116 Query: 116 SARIDAAQRARDMALLDYAVKRTEIRAGVVAAYYDVMVAAERQRLASELLGLANTSAQMT 175 ARI+AA+R RD AL++ K+ +IRA V++A+YDV+V ER RLA E + LA + Q+ Sbjct: 117 GARINAAERGRDFALMELKAKQADIRAKVISAFYDVLVGQERYRLAEESVELAKRATQIA 176 Query: 176 GRRVMAGKISPVEQTKAQVAQSSARLELNEANSDLTVAQKKLATFWGSVGNGFELTDHGV 235 RRV++GKISPVE+T+A+VA+S R+EL +A ++L A+++LA WG V FE + Sbjct: 177 ARRVLSGKISPVEETRARVAESGVRIELAQATNELETARRQLAATWGDVAPRFERVEDPE 236 Query: 236 ESLPPLPAIAQLTEKVASGPTVRLAQLEVERRRALASIETSKRTPDVSLTLGNKRDESNA 295 LP L + +LT+++ PT+ A++EVERR+A+ +E S+R PDV+++LG KRDE Sbjct: 237 TDLPALALLPELTQRLQQSPTLLRAKIEVERRQAMVEVELSRRIPDVTVSLGAKRDEQMG 296 Query: 296 RNMWVVGFSVPIPVFDSNKGNELEALKRVDIARDTLSVIEVQMQSEAAQSFERLRNAREE 355 RN V+G S+PIPVFD N+GN LE+L+R D ARD L EV + E Q+ RL AR E Sbjct: 297 RNQAVIGLSMPIPVFDRNQGNVLESLRRTDKARDELIATEVNLNVELGQAHGRLSTARLE 356 Query: 356 ATALRDEIVPAAQSAYQAARTGFELGKFGYLDVLDAQRTYFQAKAQYWKALSTAFQAAAD 415 ++ EI+P AQ Y+A GFELGKF +L+VLDAQRT+FQAK+QY ++L+ ++AA D Sbjct: 357 TELIKTEILPGAQRNYEATTKGFELGKFSFLEVLDAQRTFFQAKSQYLRSLAETYRAATD 416 Query: 416 LDRLAG 421 +DRL G Sbjct: 417 IDRLLG 422 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.126 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 633,088 Number of extensions: 22001 Number of successful extensions: 107 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 109 Number of HSP's successfully gapped: 5 Length of query: 428 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 344 Effective length of database: 723,567 Effective search space: 248907048 Effective search space used: 248907048 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)