BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4333.p (734 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094592|ref|YP_001099667.1| putative ferrisiderophore recep... 137 1e-33 gi|134096547|ref|YP_001101622.1| catecholate siderophore recepto... 123 3e-29 gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-de... 110 3e-25 >gi|134094592|ref|YP_001099667.1| putative ferrisiderophore receptor [Herminiimonas arsenicoxydans] Length = 725 Score = 137 bits (346), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 192/755 (25%), Positives = 322/755 (42%), Gaps = 86/755 (11%) Query: 11 AAAVLMSAQGAFAADSSPTQNKSDAAPQEQAALPTVTVSGRSDTATTEGSGSYTTGTTAA 70 A + ++ G + +SP +AP LP V VSG +TAT G Y ++ Sbjct: 26 AHSQVVGLNGGSSLQASPASQNESSAP-AVTTLPAVNVSGVQETATGPVIG-YRATRSST 83 Query: 71 ATHLPLSLQETPQSVTVVTRQRMDDQQLNSVQGVLDNTPGISS--YQSDSERTSFYSRGF 128 AT SL ET Q+VTVVTR ++ DQ ++Q L G+ S Y DS S RG Sbjct: 84 ATKTDTSLAETLQAVTVVTRDQIVDQGATNLQDALTYAAGVRSDAYGLDSRTDSVLVRG- 142 Query: 129 LINNVQYDGIPTVVGNTVNGSGISAI--DTSFYDRVEVVRGGSGLLTGTGNPSAAINLVR 186 +V DG+ N SA D +R+EV+RG + + G G+ +NLV Sbjct: 143 ASPDVYIDGL-----RQANDYYTSAARPDPFTLERIEVLRGPAAMSYGQGSTGGVVNLVS 197 Query: 187 KRPTQDFSASASLSAGSWDTHRATADISTPLTADGRIRARVVATDQEGHSYINGYKPEKK 246 KRP +F + G++ + AD++ PLT D + R+VA + + ++ K ++ Sbjct: 198 KRPQAEFQGEVGVQLGNFGRKQLQADVTGPLTEDKQWLYRLVAVARNADTQVDYVKDDRT 257 Query: 247 SFYGIVEADLSPRTTASLGYDYQDLTSTGST-----WGGLPLWFSNGTQASYSPSQSYAQ 301 + + T+ +L YQ TGST W G+ NG + S+ + Sbjct: 258 LIAPSLTWKPNGVTSLTLQGLYQR-DRTGSTSQFLPWAGMLTPNVNGMIPT---SRFIGE 313 Query: 302 DWSHWDNTYKTAFAAIDHRFDNGWKLRA----IANQ--YRTEYNAELLGLVGRPDASTGL 355 +D ++ +H+ ++ W R N+ Y T Y D STGL Sbjct: 314 PGDRYDTDRQSLGYLFEHQLNDNWTFRQNFRYAVNEVDYFTHYADSF-----STDPSTGL 368 Query: 356 ----GFFPNGAYPVGLASNGS---SRQNTFDVMASGPFELLGRQHELVVGATTSRRTSNQ 408 P +G ++ S + T D + QH+L+ G +R ++ Sbjct: 369 PGGWAIDPVNQRLIGRYADDSITKVKIATIDQHLQAKLQTGPLQHDLLAGLDYTRYQRDR 428 Query: 409 NDVAPFYAGFSPVNIYDLSTPFARPDFAAMNWAPTRTEIKQSGVYSAARFSLAQPLKLIV 468 +GF ++ D+ P A ++ +Q G+Y + + + IV Sbjct: 429 Q------SGFG-MDTIDVYAPVYGNGVVATLADDPQSVQRQIGLYLQDQIKIGK--NWIV 479 Query: 469 GGRLSNYEIDDSVSGSAMHYKKNSVFTPYAGLVYDINNIYSTYVSYTRIFNPQ--TDYQD 526 L + ++++++GS +++ T G++Y + N +S YVSY+ F P T+ D Sbjct: 480 SAGLRHDRVNNALAGS--EDEESRATTKRVGVMYLLENGWSPYVSYSESFTPVAGTNAYD 537 Query: 527 SKGNVLTPATGKTTEIGLKGAYLDGRLNASVAVFETKLDNAAQIVAGAFTPSGAQAYTGV 586 + P G+ E G+K ++G + A+++ N + PS V Sbjct: 538 QR---FKPVRGEQIEGGVKYMPVNGHSQFTAAIWKIDEKNKSTT-----DPSNPLNQIQV 589 Query: 587 DGTKSRGIEVDLQGELTRDWNIYAGLSHFAAQDGNGVRLNSQ---IPRTTAQLFTTYRLP 643 TK+RG+E++ + +T ++ L+H+ D L+ Q +PR A + +R Sbjct: 590 GQTKNRGVELEWKASITPTIDV---LAHYNYTD-----LDEQLDEVPRHQAAAWGKWRFS 641 Query: 644 -GQWSKLTLGGGVKWQSRFYEAANTGTSTLGGEQGAYALASLMARYAVSTKTTVTVNVNN 702 G S LG G ++ S F + T ++ + ++ RYA +NVNN Sbjct: 642 IGGVSGFALGAGARYMSSFRDGVAPTTPSVTLLDALLSWDTMNWRYA--------LNVNN 693 Query: 703 LFDKKY---ALQKGDFDTVTYGAPRNAMVTLAYKY 734 L DK Y L +GD YGA R+A++T YK+ Sbjct: 694 LTDKVYNATCLSRGD---CWYGARRSAVLTATYKF 725 >gi|134096547|ref|YP_001101622.1| catecholate siderophore receptor Fiu [Herminiimonas arsenicoxydans] Length = 759 Score = 123 bits (309), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 179/740 (24%), Positives = 296/740 (40%), Gaps = 109/740 (14%) Query: 36 APQEQAALPTVTVSGRSDTATTEGSGSYTTGTTAAATHLPLSLQETPQSVTVVTRQRMDD 95 A Q + LP V V G +++ + T ++ L T Q++TV+ ++ + Sbjct: 35 AQQVTSVLPEVEVHGTTESYKAD---------TVSSPKFTQPLLNTTQTITVIKKELVQQ 85 Query: 96 QQLNSVQGVLDNTPGISSYQ-----SDSERTSFYSRGFLINNVQYDGIPTVVGNTVNGSG 150 Q ++ L NTPG+ ++ + + + Y RGF D ++ + V G Sbjct: 86 QGGATLTEALRNTPGVGTFSLGENGNTNTGDAIYMRGF-------DTSSSIFVDGVRDLG 138 Query: 151 ISAIDTSFYDRVEVVRGGSGLLTGTGNPSAAINLVRKRPTQDFSASASLSAGSWDTHRAT 210 + D +++EV +G +G TG G+P+ +INL K+PT + S S+S GS D R T Sbjct: 139 SISRDIFNIEQIEVTKGPAGADTGRGSPTGSINLSTKQPTMKEAYSGSVSVGSGDYKRIT 198 Query: 211 ADISTPLTADGRIRARV-VATDQEGHSYINGYKPEKKSFYGIVEADLSPRTTASLGY--- 266 AD++ PL DG R+ + D G + + K +++ L T L Y Sbjct: 199 ADLNKPLDFDGGAAFRINLLKDDSGVAGRDIVKNDRQGIAAAFAFGLKTNTRTYLNYLHV 258 Query: 267 DYQDLTSTGSTWGGLPLW----------------------FSNGTQASYSPSQSYAQDWS 304 D ++ G GLP + F NG S S Y Sbjct: 259 DQSNIPDGGVPTIGLPGYSSPVQAANPAATPPVVAIPARPFLNGASRVNS-SNFYGTVGD 317 Query: 305 HWDNTYKTAFAAIDHRFDNGWKLRAIANQYRTEYNAELLGLVGR-PDASTGLGFFPNGAY 363 D T A ++H KL+ +T N L G +G P+ T PN A Sbjct: 318 FDDVTADMLTARVEHDISPDVKLQNTTRFGKTSQNYLLTGFMGSAPNLLT-----PNPAD 372 Query: 364 PV--GLASNGSSRQNTFDVMA-----SGPFELLGRQHELVVGATTSRRTSNQNDVAPFYA 416 P LA + + T ++ + + F+ +H LV G S++ + YA Sbjct: 373 PTTWTLARSSQMKDQTNEIFSNQTNLTAKFDTGAVKHSLVTGV----ELSSEKQRSLGYA 428 Query: 417 GFSPVNIYDLSTPFARPDFAAMNWAPTRTEIKQSG------VYSAARFSLAQPLKLIVGG 470 G ++ +L P P + P G VY L+ ++ G Sbjct: 429 GLGTISAANLYNP--NPYLVRTGYNPVGNGTNSEGRTNTLSVYLFDTLELSPQWQINGGV 486 Query: 471 RLSNYEIDDSVSGSAMHYKKNSVFTPYAGLVYDINNIY------STYVSYTRIFNPQ--- 521 R+ +Y D S ++ + ++ L + + +Y S YVSY P Sbjct: 487 RVDHY--DTKYESSTLNVRNATLNKSGTLLNWKLGGLYKPTEDSSLYVSYATSKQPPGGS 544 Query: 522 ----TDYQDSKGNV-LTPATGKTTEIGLKGAYLDGRLNASVAVFETKLDNAAQIVA-GAF 575 + +S NV P +T EIG K LD RL + A++ T + N + A F Sbjct: 545 NFALSSNANSAANVNYDPQETRTAEIGAKWDLLDKRLGLTTAIYRTDVKNEIEGNATDGF 604 Query: 576 TPSGAQAYTGVDGTKSRGIEVDLQGELTRDWNIYAGLSHFAAQDGNGVRLN-------SQ 628 T +G + + G+E+ + GE+T W + AG + G +N S Sbjct: 605 TQTGKK--------RVEGVELGVVGEITSAWQVSAGYTRMRTDVTAGAIVNQDGTSGLSY 656 Query: 629 IPRTTAQLFTTYRLPGQWSKLTLGGGVKWQSRFYEAANTGTSTLGGEQGAYALASLMARY 688 P+ +TTY+LPG + T+GGG ++ ++ + T + +Y + MA Y Sbjct: 657 TPKQAFTAWTTYKLPGGF---TIGGGARFVDALHKPKDGAVGTPQFVE-SYWVYDAMASY 712 Query: 689 AVSTKTTVTVNVNNLFDKKY 708 VS ++ +N+ NL DK Y Sbjct: 713 EVSKNVSLQLNLYNLADKDY 732 >gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-dependent receptor protein [Herminiimonas arsenicoxydans] Length = 716 Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 161/699 (23%), Positives = 277/699 (39%), Gaps = 71/699 (10%) Query: 40 QAALPTVTVSGRSDTATTEGSGSYTTGTTAAATHLPLSLQETPQSVTVVTRQRMDDQQLN 99 + LP V V + +E G + + PL +ETP S++V+T ++M D+ + Sbjct: 31 ENVLPEVVV-----MSDSESDGIARNASVGGFSDAPL--RETPASISVITHEQMQDRSIR 83 Query: 100 SVQGVLDNTPGI-SSYQSDSERTSFYSRGFLIN---NVQYDGIPTVVGNTVNGSGISAID 155 S + + ++Y + F RGF ++ N + DG+ + S I Sbjct: 84 SATDAVKYDASVQNAYNAVGLADWFSIRGFTLDMGSNYRKDGMVVLAH--------SMIP 135 Query: 156 TSFYDRVEVVRGGSGLLTGTGNPSAAINLVRKRPTQDFSASASLSAGSWDTHRATADIST 215 +R EV++G +GL G + +N V KRPT + S +L A T D+ Sbjct: 136 MENKERFEVLKGLAGLQVGMASSGGILNYVVKRPTNEPLRSVTLEASERGTLYGAVDLGG 195 Query: 216 PLTADGRIRARVVATDQEGHSYINGYKPEKKSFYGIVEADLSPRTTASLGYDYQ---DLT 272 + D R R+ A + SY+ G E++ G + LSP+ + DY L+ Sbjct: 196 R-SDDKRFGYRINAAGADIKSYVQGSNGERQFVSGAFDWRLSPKALLQIDLDYHHKSQLS 254 Query: 273 STGSTWGGLPLWFSNGTQA-SYSPSQSYAQDWSHWDNTYKTAFAAIDHRFDNGWKLRAIA 331 G G G A + +QS++ + N F ++ + W A Sbjct: 255 VPGFQLLGPAQRIPTGVSAKTMLNNQSWSLPVTDDTNNLGIKF---EYELNEQWHTTLQA 311 Query: 332 NQYRTEYNAELLGLVGRPDASTGLGFFPNGAYPVGLASNGSSRQNTF--DVMASGPFELL 389 N++ + + G G+ +G + + + ++ M G F Sbjct: 312 NKFELRRDDAVALASGCVAEGLSPGYCADGTFNMYDLRRDNDKRTVMSTQAMLQGKFNAG 371 Query: 390 GRQHELVVGATTSRRTSNQNDVAPFYAGFSPVNIYDLSTPFARPDFAAMNWAPT-----R 444 +H+L +G +T R N + AG +IY P + + PT R Sbjct: 372 TIKHDLTLGMSTMNRRDNYANFLFESAGTG--SIY-------YPKYNPLTLGPTNPVSLR 422 Query: 445 TEIKQSGVYSAARFSLAQPLKLIVGGRLSNYEIDD-SVSGSAMHYKKNSVFTPYAGLVYD 503 + ++ V+ +L KL G R + + + SG + P LV+ Sbjct: 423 RKDEERSVFVQDVLTLNDKFKLHAGMRYTQLQRTQFTSSGGLFRHTDKDFLLPNVALVFS 482 Query: 504 INNIYSTYVSYTRIFNPQTDYQDSKGN---VLTPATGKTTEIGLKGAYLDGRLNASVAVF 560 + +S Y +Y++ P + N VL P + EIG+K A L ++ + A+F Sbjct: 483 PQSNWSIYGTYSQGLEPGAEVPSGLVNEETVLDPNKSRQVEIGIK-ADLSQDISVAAALF 541 Query: 561 ETKLDNAAQIVAGA-FTPSGAQAYTGVDGTKSRGIEVDLQGELTRDWNIYAG---LSHFA 616 + DN +G + +G + + RG+E+ QG TR+ + A L FA Sbjct: 542 QIHRDN--NYTSGLNYVTAGKEVH--------RGLELSAQGRATRNLTLGASMTTLQAFA 591 Query: 617 AQDGN----GVRLNSQIPRTTAQLFTTYRLPGQWSKLTLGGGVKWQSRFYEAANTGTSTL 672 G+ G R+ + +P + +F Y LP Q L L + S A N S L Sbjct: 592 ENTGDARVEGKRIGN-VPVLKSAVFMDYTLP-QMPALKLNAMWIYSSSKVFAPNAQISEL 649 Query: 673 GGEQGAYALASLMARYAVS---TKTTVTVNVNNLFDKKY 708 + Y + ++ A+Y TKTT ++N+FDK Y Sbjct: 650 NKKVDGYHVLNVGAQYKTKVSGTKTTFRFGIDNVFDKFY 688 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.313 0.129 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,351,591 Number of extensions: 56857 Number of successful extensions: 149 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 139 Number of HSP's successfully gapped: 6 Length of query: 734 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 645 Effective length of database: 707,092 Effective search space: 456074340 Effective search space used: 456074340 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)