BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4332.p (371 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095879|ref|YP_001100954.1| acridine efflux pump protein [H... 83 2e-17 gi|134093331|ref|YP_001098406.1| hypothetical protein HEAR0041 [... 80 2e-16 gi|134094274|ref|YP_001099349.1| hypothetical protein HEAR1042 [... 80 2e-16 gi|134095558|ref|YP_001100633.1| acridine efflux pump protein [H... 78 7e-16 gi|134094168|ref|YP_001099243.1| putative secretion protein [Her... 57 2e-09 >gi|134095879|ref|YP_001100954.1| acridine efflux pump protein [Herminiimonas arsenicoxydans] Length = 407 Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 92/340 (27%), Positives = 153/340 (45%), Gaps = 36/340 (10%) Query: 47 VSTIRAEARAVPENLQVVASLQAVREVQLAPDTSGRVTAIHFESGQTVKQGGLLVELYDA 106 V TI++ A V L L++ R ++ G V F G VK G L + A Sbjct: 40 VVTIKSSALGVTNELP--GRLESTRIAEIRARVPGVVLKRTFREGSDVKAGATLFLIDPA 97 Query: 107 PEQADRAAAVAKADF-------AQLQLRRSRELSPAGAESRELLEQ-----RQADADQAV 154 +A +A A A+L+ +R + L A S++ + +QA+AD A Sbjct: 98 QFKATYNSANAAVARAEATLLQAELKEKRYKPLVATNAISKQEYDDVTATLKQAEADLAA 157 Query: 155 AAVRQLDARI--EQKNIRAPFSGQIGIRHVNPGQYLNAGDA--IATLTQADPLYVNFQLP 210 + + AR+ + + +P SG+IG V G + +A +AT+ Q DP+YVN Sbjct: 158 SKAARETARLSLDYATVTSPISGRIGRALVTEGALVGQNEATPLATVQQIDPIYVNMTQS 217 Query: 211 QQDL---------SRLTVGASVQVSVDAVP--GRVFT--GKISSIEPRIDGETRNVAVQA 257 ++ +L QV V V G+ + GK+ + +D + + ++A Sbjct: 218 STEILQLQRALADGKLKSAGKGQVKVTLVTEDGQEYAQPGKLLFSDLTVDASSGAITLRA 277 Query: 258 ILPNADRLLKSGMYATARLDLPAVEDGIVLPLTAIQTSASGDSVVLVRGADAQGIGKAVA 317 PN D L GMY AR++ E+ I +P AI + G +V++V + V+ Sbjct: 278 EFPNPDSQLLPGMYVRARVEQAINENAITVPQQAISRTPDGAAVMVVSAENT-----VVS 332 Query: 318 VPVVTGQRLNEEVLVTQGVKAGDIVVMAGQNRLPPGAVVK 357 PV TG + +++ G+K GD V++ G ++ PGA VK Sbjct: 333 RPVTTGAASGDSWVISDGLKDGDQVIVEGLQKIKPGATVK 372 >gi|134093331|ref|YP_001098406.1| hypothetical protein HEAR0041 [Herminiimonas arsenicoxydans] Length = 383 Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 104/385 (27%), Positives = 173/385 (44%), Gaps = 30/385 (7%) Query: 7 FRAKPIAISVVGLVVVFGALYAVRSLRSGGA----EHYAMPPLPVSTIRAEARAVPENLQ 62 F+ K I I+++ L V+ + A+ S +SG A E P L V+T + +P L Sbjct: 4 FKRKFIIIALIALFVLAAIIIALASGKSGTAKKKDETGPKPALTVTTAQPAQAQLPIKLS 63 Query: 63 VVASLQAVREVQLAPDTSG-RVTAIHFESGQTVKQGGLLVELYDAPEQADRAAAVAK--- 118 S+ A +E + +++G ++T + G V++G +L A +AD A A A Sbjct: 64 ANGSITAWQEAIIGSESNGLQLTDVRVNVGDVVRRGQVLATFSSASTKADLAQARASVME 123 Query: 119 ----ADFAQLQLRRSRELSPAGAESRELLEQ----RQADADQAVAAVRQL---DARIEQK 167 A A+ R+R L GA S + + Q Q +A AA L + R+ Q Sbjct: 124 AEANAADAKNNAERARTLENTGALSTQQINQYLTTEQTARAKAAAAKAMLTVQEVRLAQT 183 Query: 168 NIRAPFSGQIGIRHVNPGQYLNAGDAIATLTQADPLYVNFQLPQQDLSRLTVGASVQVSV 227 + A +G I R+ G + AG + L + L ++ +L RL G ++ Sbjct: 184 QVLASDNGIISARNATVGAVVGAGTELFRLIRQGRLEWRAEVTSAELGRLATGTPALIT- 242 Query: 228 DAVPGRVFTGKISSIEPRIDGETRNVAVQA-ILPNADRL--LKSGMYATARLDLPAVEDG 284 A G GK+ I P +D + R+ V +LP A + +++GM+AT DL + Sbjct: 243 -AANGTQVKGKVRMIAPTVDAQNRSALVYVDLLPAAANVAPVRAGMFATGEFDL-GMSTA 300 Query: 285 IVLPLTAIQTSASGDSVVLVRGADAQGIGKAVAVPVVTGQRLNEEVLVTQGVKAGDIVVM 344 + +P AI G S V AD + + + G+RL + + V +G+ ++V Sbjct: 301 VTVPQQAIVIR-DGFSYVFRLNADH----RVTQLKIEPGRRLQDRIEVLKGIAPDAVLVA 355 Query: 345 AGQNRLPPGAVVKINAPAAAAPTAG 369 +G L G +VK+ P A A +AG Sbjct: 356 SGAGFLNDGDLVKVVTPPATAASAG 380 >gi|134094274|ref|YP_001099349.1| hypothetical protein HEAR1042 [Herminiimonas arsenicoxydans] Length = 382 Score = 79.7 bits (195), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 106/378 (28%), Positives = 166/378 (43%), Gaps = 44/378 (11%) Query: 14 ISVVGLVVVFGALYAVRSLRSGGAEHYAMPPLPVSTIRAEARAVPENLQVVASLQAVREV 73 I V+GL+ FG S R+ ++ + V T AE + + + A+ V Sbjct: 14 IVVLGLIAYFGLRDT--SERNKKPDNIQI----VKTALAEQKTISIKAFANGYVTAINTV 67 Query: 74 QLAPDTSGRVTAIHFESGQTVKQGGLLVELYDAPEQADRAAAVA-----KADF--AQLQL 126 + P V IH GQ VK G LL L + +Q++ A A A ++D A+L L Sbjct: 68 DVRPKVQNIVRTIHVREGQFVKAGQLLFTLDERSDQSNVAKAQAELAAGQSDLADAELAL 127 Query: 127 RRSRELSPAGAESRELLEQRQAD-ADQAVAAVRQL-----------DARIEQKNIRAPFS 174 +R+ +L SR + Q D A VAA+R + + I A S Sbjct: 128 KRNEDLL-----SRNFVSQAVVDTARNKVAALRNTSKANRAIAESSNITLSDNRIAASIS 182 Query: 175 GQIGIRHVNPGQYLN-AGDAIATLTQADPLYVNFQLPQQDLSRLTV-----GASVQVSVD 228 G+IGI V+PG +GD + T++Q DP+ V+F LP+++L+ +T A V + Sbjct: 183 GRIGIISVHPGSLAQPSGDPMVTISQLDPIAVSFTLPERELANITATYPQGNAPVTARLP 242 Query: 229 AVPGRVFTGKISSIEPRIDGETRNVAVQAILPNADRLLKSGMYATARLDLPAVEDGIVLP 288 P TGK+ I+ D ++ + ++A NA + L G + L V +++P Sbjct: 243 GQPE--MTGKLIFIDNAADTQSGTIRMKAQFDNAAQKLWPGSFVNVSLVSRNVSHAVLVP 300 Query: 289 LTAIQTSASGDSVVLVRGADAQGIGKAVAVPVVTGQRLNEEVLVTQGVKAGDIVVMAGQN 348 A+ T D + V DA K V VV + V+ G+ AG VV+ G Sbjct: 301 AQAVVTGPI-DKFIYVVQPDA--TVKEQKVDVVAIEEGQAAVI---GLDAGARVVVEGTQ 354 Query: 349 RLPPGAVVKINAPAAAAP 366 L PG+ + +AAP Sbjct: 355 NLRPGSKISEARDKSAAP 372 >gi|134095558|ref|YP_001100633.1| acridine efflux pump protein [Herminiimonas arsenicoxydans] Length = 403 Score = 77.8 bits (190), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 84/307 (27%), Positives = 140/307 (45%), Gaps = 31/307 (10%) Query: 74 QLAPDTSGRVTAIHFESGQTVKQGGLLVELYDAPEQADRAAAVAKA-------DFAQLQL 126 ++ P +G + F G VK G L +L DA QA+ A+A A A+L Sbjct: 67 EVRPQVNGIIKKRLFTEGAQVKAGQPLYQLDDAIYQANYASAKAALARAQATLKSAELNA 126 Query: 127 RRSRELSPAGAESRELLEQRQADADQAVAAVRQLDARIEQKN-------IRAPFSGQIGI 179 R+ EL A SR+ E +A Q+ A V A ++ + I +P +G+IG Sbjct: 127 TRTAELVKIDAVSRQDNENAEAALSQSKADVAAAQAALQSNSVTLGYAQITSPITGRIGK 186 Query: 180 RHVNPGQYLNAGDA--IATLTQADPLYVNFQLPQQDL---------SRLTVGASVQVSVD 228 V G + A A +AT+ Q +P+Y++ +L RLT ++ V + Sbjct: 187 SSVTQGALVTANQAAALATVQQLNPVYIDLTQSSSELLQLRKELAAGRLTQSGNLPVQIV 246 Query: 229 AVPGRVF--TGKISSIEPRIDGETRNVAVQAILPNADRLLKSGMYATARLDLPAVEDGIV 286 G + GK++ + +D T + A++ +PN D +L GMY A + ++ I+ Sbjct: 247 LEDGSRYQHDGKLAFADVTVDPGTGSFALRVTVPNPDNILMPGMYVRALIGNGVRQNAIL 306 Query: 287 LPLTAIQTSASGDSVVLVRGADAQGIGKAVAVPVVTGQRLNEEVLVTQGVKAGDIVVMAG 346 +P I G++ +V D GK PV + + ++ LV G+ AGD V++AG Sbjct: 307 VPQQGIARDPKGNTSAMVVDKD----GKVALRPVSVSRTIGDKWLVEDGLAAGDRVIVAG 362 Query: 347 QNRLPPG 353 ++ PG Sbjct: 363 LQKIKPG 369 >gi|134094168|ref|YP_001099243.1| putative secretion protein [Herminiimonas arsenicoxydans] Length = 481 Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 70/266 (26%), Positives = 110/266 (41%), Gaps = 35/266 (13%) Query: 64 VASLQAVREVQLAPDTSGRVTAIHFESGQTVKQGGLLVEL----YDAPEQADRAA----- 114 ++Q + V + SG++ +H E G VK+G LL E+ + A A RA Sbjct: 69 TGTVQPLEYVDVGAQVSGQLKKLHIEVGSVVKEGDLLAEIDPTVFRATVDARRAGLRNQQ 128 Query: 115 AVAKAD-----FAQLQLRRSRELSPAGAESRELLEQRQADADQAVAAVRQLDARIEQK-- 167 A K A LQ R + L A A + E L+ +A A A + L A+IEQ Sbjct: 129 ATMKERESALALASLQYTRQKNLMAADATTAETLQIAEATLRAAKAQIDALQAQIEQTQS 188 Query: 168 ------------NIRAPFSGQIGIRHVNPGQYLNAGDAIATLTQ-AD--PLYVNFQLPQQ 212 I AP +G + GQ LNA T+ + AD + V Q+ + Sbjct: 189 TLRADEANLNYAKIYAPMTGTVVSLTARQGQTLNANQNAPTILRIADLSTMTVQTQVSEA 248 Query: 213 DLSRLTVGASVQVSVDAVPGRVFTGKISSIEPRIDGETRNVAVQAIL---PNADRLLKSG 269 ++ +L+ V + GR + G + IEP T NV + L PN ++ L Sbjct: 249 EIGKLSKNMEVYFTTLGSQGRRWYGALRKIEP-TPTVTNNVVLYNALFDVPNNNQALMPN 307 Query: 270 MYATARLDLPAVEDGIVLPLTAIQTS 295 M +D +++P +A+ T+ Sbjct: 308 MTTQVFFIAATAKDVLLVPTSAVTTT 333 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.131 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 605,010 Number of extensions: 23101 Number of successful extensions: 112 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 9 Length of query: 371 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 288 Effective length of database: 726,862 Effective search space: 209336256 Effective search space used: 209336256 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)