BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4331.p (1030 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095880|ref|YP_001100955.1| aminoglycoside/multidrug efflux... 489 e-139 gi|134095559|ref|YP_001100634.1| aminoglycoside/multidrug efflux... 479 e-136 gi|134094275|ref|YP_001099350.1| multidrug ABC transporter membr... 436 e-123 gi|134093332|ref|YP_001098407.1| putative acriflavin resistance/... 288 7e-79 gi|134093795|ref|YP_001098870.1| RND family outer membrane coppe... 238 1e-63 >gi|134095880|ref|YP_001100955.1| aminoglycoside/multidrug efflux pump [Herminiimonas arsenicoxydans] Length = 1049 Score = 489 bits (1259), Expect = e-139, Method: Compositional matrix adjust. Identities = 321/1007 (31%), Positives = 526/1007 (52%), Gaps = 25/1007 (2%) Query: 7 FIRRPILALVVSLLILLMGATAVFLLPVRQYPYLENATITISTMLPGATQDVMQGFVTTP 66 FI RP+ A V+++ I+L GA A+ LPV QYP + TI I+ PGAT + VT+ Sbjct: 5 FIDRPVFAWVLAIFIMLAGALAITSLPVSQYPNIAPPTIVITATYPGATAQTLDDSVTSL 64 Query: 67 ISQSIATASGIEYLSSTTK-QGRSEIKARLVLNANADRTMTEILAKVQQVKYQLPAGVTD 125 I Q + A G++Y+ S ++ G+ +I N D ++ ++++V+ +LPA VT Sbjct: 65 IEQEMNGADGLQYVESQSQANGQVQITVTFSPETNPDLAAVDVSNRLKRVEARLPAAVTQ 124 Query: 126 PVISKSTEGGTAVQYIAFYSNTLSIPQVT--DFASRVAQPLLTSIPGVASADVFGGQALA 183 + + + +I S + V D+ SR + +PGV A +FG + A Sbjct: 125 QGVQVAKARSNFLMFIGLSSTDGRLDPVALGDYLSRNVLNEVKRVPGVGQAQLFGTER-A 183 Query: 184 MRIWIDPVRLAAHGLSAGEISAALRANNVQSAPGQLKS--SLTVTNISAATDLRGV---- 237 MRIWIDP +L L+ E++AA+ N A G L S + ISA + G Sbjct: 184 MRIWIDPNKLVGLNLTPAEVTAAINTQNALVAGGILGDLPSPSSQQISATVVVNGQLSSP 243 Query: 238 DDFRQMVVKSSPAGGIVRLSDVATIEVGGQNYNNLSFASGVPAIFVALQPTPDGNPLEIV 297 ++F +++++++ G VRL DVA IEVGGQ+Y G P F+ +Q +P N L Sbjct: 244 EEFGKIILRANKDGSSVRLRDVARIEVGGQSYQTSGRLDGNPTSFIGVQLSPTANALGTA 303 Query: 298 KRANALLPKIRAMAPPGLTVAPNYDVARFVNASIEEVQHTLVEAIAIVIVVIFLFLGTFR 357 + + + P G+ YD ++FV SIEEV TL+EAI +V +V++LFL R Sbjct: 304 TAVHKKMEDLARYFPAGVKYTVPYDTSKFVKISIEEVVKTLIEAIILVFLVMYLFLQNIR 363 Query: 358 AVIIPVVTIPLSLVGTAALMLACGFSINLLTLLAMVLAIGLVVDDAIVVVENIHRHI-EE 416 +IP + +P++L+GT A +L GFSIN+LT+ MVLAIG++VDDAIVVVEN+ R + EE Sbjct: 364 YTLIPTIVVPVALLGTFATLLVFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMSEE 423 Query: 417 GLSPVRAALLGAREIVGPVIAMTITLAAVYAPIGMMGGLTGALFKEFAFTLAGSVIVSGV 476 GLSP A +I G +I +T+ L AV+ P+ GG GA++++F+ ++ S++ S + Sbjct: 424 GLSPRDATRKAMGQITGAIIGITLVLIAVFLPMAFFGGAVGAIYRQFSLSMVASMVFSAL 483 Query: 477 VALTLSPVMSSMLLS-----SRQGEGRLAKRIEHSMEALTAIYQRILAHTLAARGAVLLV 531 +A TL+P + + +L +G + YQ + L ++V Sbjct: 484 MAFTLTPALCATILKPVEKGHHHEKGGFFGWFNRIFHKTSLSYQGFIGKMLTKTTRYMIV 543 Query: 532 GAVVLAAIVVLFAGTRRELAPTEDQGAIIVVTKAPQYAGVGYTARYAQQIEKLFESIPEF 591 +++A + +L+A P+EDQG II + P A G T +QIE+ + P Sbjct: 544 YGLIVACVGLLYARLPASFLPSEDQGYIITNVQLPAGASSGRTLEVLKQIEEYYLKQPAV 603 Query: 592 DS--SFMNIGDYAGGQNMMIGGAILKDWSERKR--SATDIQSQIQAAGGAIDGETLTAVQ 647 + S GQN + DWS+R + +A I + A I + + Sbjct: 604 EHVISISGFSFSGNGQNAGLVFTPFIDWSKRGKEDTADAIAGRAFGAFSQIKDAIVFPLN 663 Query: 648 LPPLP--GSSGGLPVQMVLRSPDDFKMLYETGEKIKNAAYASGLFLYAQNDLSYDSPQAH 705 PP+ G++ G ++ R L ++ A S + + + D+PQ Sbjct: 664 PPPIRELGNATGFTFRLQDRGGLGHDALVAARNQLLGMAGQSKILAGVRPEGLEDAPQLQ 723 Query: 706 ITIDNAKASQMGLSMQSIADTLAVLVGENYVNRFNFHDRSYDVIPQVRGSERMTPEDIGR 765 + ID KA+ +G+ SI L+ +G +YVN F R VI Q R+ +D+ + Sbjct: 724 LDIDRDKANALGVPFASINSVLSTSLGSSYVNDFPNQGRQQRVIVQADAPRRLQADDLTK 783 Query: 766 FYVKASSGAMVPLSTVIQVEMRPQANQLAQFNQMNSTTLELLPAPGVSMGEAVAFLQS-- 823 Y ++++GAMVP S+ I + QL ++N + + PG S G+A+ +++ Sbjct: 784 LYARSTTGAMVPFSSFITSKWITGPVQLIRYNGYPAMKISGGVKPGFSTGDAMKEMEALV 843 Query: 824 QPLPPGTSVDWLSDSRQFVQEGNRLLVSFCFALVVIFLVLAAQFESLRDPLVILVTVPLA 883 Q LP G +W S + GN+ + +L+ +FLVLAA +ES PL +++ VPL Sbjct: 844 QKLPAGIGYEWTGQSLEEQTSGNQAPALYALSLIAVFLVLAALYESTSIPLSVMLVVPLG 903 Query: 884 VCGALVPLWLGYATLNIYTQIGLVTLIGLISKHGILMVTFANHIQHHENLSRIDAIEKAA 943 + GAL+ + L ++Y ++G++ ++GL +K+ IL++ FA +Q + I+A +A Sbjct: 904 ILGALLGVTLRGMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQ-AQGKGLIEATLEAV 962 Query: 944 AVRMRPVLMTTAAMVAGLVPLLFANGAGSASRFSIGIVVVMGMMIGT 990 +R RP++MT+ A + G++PL+ A+GAGSAS+ +IG V+ GM+ T Sbjct: 963 HLRFRPIIMTSLAFILGVLPLVIASGAGSASQRAIGTGVMGGMITAT 1009 Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/265 (25%), Positives = 125/265 (47%), Gaps = 15/265 (5%) Query: 759 TPEDIGRFYVKASS-GAMVPLSTVIQVEMRPQANQLAQFNQMNSTTL---ELLPAPGVSM 814 +PE+ G+ ++A+ G+ V L V ++E+ Q+ Q + N T+ +L P ++ Sbjct: 242 SPEEFGKIILRANKDGSSVRLRDVARIEVGGQSYQTSGRLDGNPTSFIGVQLSPTAN-AL 300 Query: 815 GEAVAFLQ-----SQPLPPGTSVDWLSDSRQFVQEG-NRLLVSFCFALVVIFLVLAAQFE 868 G A A + ++ P G D+ +FV+ ++ + A++++FLV+ + Sbjct: 301 GTATAVHKKMEDLARYFPAGVKYTVPYDTSKFVKISIEEVVKTLIEAIILVFLVMYLFLQ 360 Query: 869 SLRDPLVILVTVPLAVCGALVPLWLGYATLNIYTQIGLVTLIGLISKHGILMVTFANHIQ 928 ++R L+ + VP+A+ G L + ++N+ T G+V IG++ I++V I Sbjct: 361 NIRYTLIPTIVVPVALLGTFATLLVFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 420 Query: 929 HHENLSRIDAIEKAAAVRMRPVLMTTAAMVAGLVPLLFANGAGSA--SRFSIGIVVVMGM 986 E LS DA KA ++ T ++A +P+ F GA A +FS+ +V M Sbjct: 421 SEEGLSPRDATRKAMGQITGAIIGITLVLIAVFLPMAFFGGAVGAIYRQFSLSMVASMVF 480 Query: 987 MIGTFFTLF--VLPTIYSFIAKDHR 1009 FTL + TI + K H Sbjct: 481 SALMAFTLTPALCATILKPVEKGHH 505 >gi|134095559|ref|YP_001100634.1| aminoglycoside/multidrug efflux pump [Herminiimonas arsenicoxydans] Length = 1053 Score = 479 bits (1233), Expect = e-136, Method: Compositional matrix adjust. Identities = 341/1036 (32%), Positives = 551/1036 (53%), Gaps = 48/1036 (4%) Query: 7 FIRRPILALVVSLLILLMGATAVFLLPVRQYPYLENATITISTMLPGATQDVMQGFVTTP 66 FI RPI A V+S++I+L G A+F LP+ QYP + T++I PGA+ V++ VT Sbjct: 5 FIDRPIFAWVLSIIIMLAGGLAIFTLPISQYPTIAPPTVSIQATYPGASAKVVENSVTQI 64 Query: 67 ISQSIATASGIEYLSSTTK-QGRSEIKARLVLNANADRTMTEILAKVQQVKYQLPAGVTD 125 I Q++ G+ Y+S+T+ G +++ + D ++ K+Q LP V Sbjct: 65 IEQNMKGLDGLIYMSATSSATGSAQLTLTFDNKTDPDIAQVQVQNKLQLASPLLPQEVQR 124 Query: 126 P--VISKSTEGGTAVQYIAFYSNTLSIPQ--VTDF-ASRVAQPLLTSIPGVASADVFGGQ 180 V+SK+ G +Q + F S S+ + ++D+ A+ + PL + +PGV + VFG + Sbjct: 125 QGVVVSKAASG--FLQVVGFVSEDGSMDKDDISDYVAANLVDPL-SRVPGVGNIQVFGSK 181 Query: 181 ALAMRIWIDPVRLAAHGLSAGEISAALRANNVQSAPGQLKSSLTV------TNISAATDL 234 +MRIW+DP +L + L+ +I A +RA N Q A GQL + + ISA L Sbjct: 182 -YSMRIWLDPNKLDTYKLATTDIIATIRAQNAQVAVGQLGGAPSAPGQQLNATISAQDRL 240 Query: 235 RGVDDFRQMVVKSSPAGGIVRLSDVATIEVGGQNYNNLSFASGVPAIFVALQPTPDGNPL 294 + + FR +V++S+P G ++L D+A +E+G +NY +S +G PA V + + N L Sbjct: 241 QTPEQFRAIVIRSNPDGSTLKLGDIARVELGAENYETISRYNGKPATGVLISLSTGANAL 300 Query: 295 EIVKRANALLPKIRAMAPPGLTVAPNYDVARFVNASIEEVQHTLVEAIAIVIVVIFLFLG 354 + L +++ P GLT +D F++ SI+ V TL+EAIA+V +V++LF+ Sbjct: 301 DTAVGIKNKLEELKPYFPAGLTAVVPFDTTPFISVSIKGVVVTLLEAIALVFLVMYLFMQ 360 Query: 355 TFRAVIIPVVTIPLSLVGTAALMLACGFSINLLTLLAMVLAIGLVVDDAIVVVENIHRHI 414 RA +IP + +P+ L+GT ++ A GFSIN+LT+ AMVLAIGL+VDDAIVVVEN+ R + Sbjct: 361 NIRATLIPTIAVPVVLLGTFGILAALGFSINMLTMFAMVLAIGLLVDDAIVVVENVERIM 420 Query: 415 -EEGLSPVRAALLGAREIVGPVIAMTITLAAVYAPIGMMGGLTGALFKEFAFTLAGSVIV 473 EEGLSP+ A +I G ++ + + L+AV+ P+ +GG TG ++++F T+ ++ + Sbjct: 421 TEEGLSPLEATRKSMDQITGALVGIALVLSAVFVPMAFLGGSTGIIYRQFTATIVSAMAL 480 Query: 474 SGVVALTLSPVM-SSMLLSSRQGE-GR---LAKRIEHSMEALTAIYQRILAHTLAARGAV 528 S +VA+ L+P + ++ML ++GE G+ + + + YQ + L RG Sbjct: 481 SVLVAVVLTPALCATMLKPVKKGEHGKTTGFFAWFNRNFDRSSVKYQSGVRGIL-GRGKR 539 Query: 529 LLVGAVVLAAIVV---LFAGTRRELAPTEDQGAIIVVTKAPQYAGVGYTARYAQQIEKLF 585 + A+ LA IVV LF P EDQG + + + P A T +++E F Sbjct: 540 FM--AIFLALIVVMVLLFVRLPSSFLPNEDQGILFSLIQTPVGATQERTLEAIKKVEHHF 597 Query: 586 --ESIPEFDSSFMNIG-DYAG-GQNMMIGGAILKDWSERKRSATDIQSQIQAAGGAIDG- 640 + +S F G +AG GQN + LKDWSER T +SQI A G G Sbjct: 598 LTDEKDAVESIFTVQGFSFAGTGQNNGMAFIKLKDWSER----TSAESQIDAVAGRAMGA 653 Query: 641 --------ETLTAVQLPPLPGSSGGLPVQMVLRSPDDFKMLYETGEKIKNAAYASGLFLY 692 A P G++ G + + L + ++ AA S L Sbjct: 654 FSQIKDAFAFAFAPPAIPELGTAAGFSFFLKDNANLGHDALVQARNQLLGAAAQSKLLAK 713 Query: 693 AQNDLSYDSPQAHITIDNAKASQMGLSMQSIADTLAVLVGENYVNRFNFHDRSYDVIPQV 752 + + DSPQ I ID KAS GLS+ I TL+ G Y++ F R V Q Sbjct: 714 VRPNGQEDSPQFRIDIDTQKASAQGLSIADINSTLSTAWGGQYIDDFIDRGRVKRVYMQA 773 Query: 753 RGSERMTPEDIGRFYVKASSGAMVPLSTVIQVEMRPQANQLAQFNQMNSTTLELLPAPGV 812 RM PED + V+ + G MVP S + +L ++N +++ ++ APG+ Sbjct: 774 DAPFRMVPEDFKLWSVRNNQGQMVPFSAFASARWEYGSPRLERYNGVSAMEIQGEAAPGI 833 Query: 813 SMGEAVAFLQ--SQPLPPGTSVDWLSDSRQFVQEGNRLLVSFCFALVVIFLVLAAQFESL 870 S G ++ ++ + LP G ++W + S Q Q G++ + + +L+++FL LAA +ES Sbjct: 834 SSGASMDEIERLAGQLPAGFGIEWTALSYQERQAGSQTTLLYTLSLLIVFLCLAALYESW 893 Query: 871 RDPLVILVTVPLAVCGALVPLWLGYATLNIYTQIGLVTLIGLISKHGILMVTFANHIQHH 930 P +L+ PL + GA++ L ++Y Q+ ++T +GL SK+ IL+V FA Sbjct: 894 TIPTAVLLVAPLGILGAVLANTLAGMERDVYFQVAMLTTVGLTSKNAILIVEFAKA-NLE 952 Query: 931 ENLSRIDAIEKAAAVRMRPVLMTTAAMVAGLVPLLFANGAGSASRFSIGIVVVMGMMIGT 990 + IDA +A VR+RP++MT+ A G++PL A+GAGS ++ +IG VV GM++GT Sbjct: 953 SGMELIDATLQAVRVRLRPIIMTSLAFGLGVLPLALASGAGSGAQRAIGTGVVGGMIVGT 1012 Query: 991 FFTLFVLPTIYSFIAK 1006 +F +P + + + Sbjct: 1013 LLGIFFIPLFFVLVER 1028 >gi|134094275|ref|YP_001099350.1| multidrug ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 1034 Score = 436 bits (1122), Expect = e-123, Method: Compositional matrix adjust. Identities = 319/1025 (31%), Positives = 530/1025 (51%), Gaps = 28/1025 (2%) Query: 1 MYFTDIFIRRPILALVVSLLILLMGATAVFLLPVRQYPYLENATITISTMLPGATQDVMQ 60 M +++ IRRP++ +++S+ ++++G F LP+ P + I ++ LPGA+ +VM Sbjct: 1 MNISELCIRRPVMTVLLSIAVVVVGFFCYFKLPIAALPSYDTPVINVTASLPGASPEVMA 60 Query: 61 GFVTTPISQSIATASGIEYLSSTTKQGRSEIKARLVLNANADRTMTEILAKVQQVKYQLP 120 V TP+ + +T +G+ +SS++ G + I N + D ++ A + + + LP Sbjct: 61 SSVATPLEKQFSTIAGVATISSSSTLGNTSIVLEFDQNRDIDAAAVDVQAALLRAQRSLP 120 Query: 121 AGVTD-PVISKSTEGGTAVQYIAFYSNTLSIPQVTDFASRVAQPLLTSIPGVASADVFGG 179 + D P K A+ +A S +LS+ ++ D+A + P L++I GVA V+G Sbjct: 121 EEMNDLPAYRKVNPADAAILLLALTSPSLSLSELNDYAENLISPSLSTIDGVAQVQVYGQ 180 Query: 180 QALAMRIWIDPVRLAAHGLSAGEISAALRANNVQSAPGQLKSSLTVTNISAATDLRGVDD 239 + A+RI + P LAA ++ EI+A++RA N S G L + A L+ + Sbjct: 181 RRYAVRIKVKPSELAARNMTLDEIAASIRAANANSPVGVLDGPRQTLTLQANRQLQNAEA 240 Query: 240 FRQMVVKSSPAGGIVRLSDVATIEVGGQNYNNLSFASGVPAIFVALQPTPDGNPLEIVKR 299 F +V+ SS G RL DVAT+E ++ + S+ +G P+I +A+Q P+ N + +V Sbjct: 241 FGNLVISSS-KGQTTRLKDVATVEDSVESTKSGSWVNGKPSIVLAVQRQPNANTVAVVDA 299 Query: 300 ANALLPKIRAMAPPGLTVAPNYDVARFVNASIEEVQHTLVEAIAIVIVVIFLFLGTFRAV 359 LP ++ P + + D + + +I +V+ TL+ I +V++VIFLFL A Sbjct: 300 VKHTLPLFQSQMPASIDLQVLNDRSVSIREAIHDVKLTLLLTILLVVLVIFLFLKRLTAT 359 Query: 360 IIPVVTIPLSLVGTAALMLACGFSINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGLS 419 IPV+++P+SL+G ALM GFS++ ++LL + +A+GLVVDDAIV++ENI RHIE+G+ Sbjct: 360 AIPVLSLPISLIGCCALMYWMGFSLDNVSLLGITIAVGLVVDDAIVMLENIVRHIEDGME 419 Query: 420 PVRAALLGAREIVGPVIAMTITLAAVYAPIGMMGGLTGALFKEFAFTLAGSVIVSGVVAL 479 P+ AAL G+RE+ +I+++I+L AV+ PI M G+ G L EFA ++ +V+VS V++L Sbjct: 420 PLAAALKGSREVSFTIISISISLVAVFIPIFFMPGVIGLLLHEFAAVVSLAVLVSAVMSL 479 Query: 480 TLSPVMSSMLLSSRQG----------EGRLAKRIEHSMEALTAIYQRILAHTLAARGAVL 529 TL P++ S L + E L + E L A Y R L +LA R +L Sbjct: 480 TLVPMLCSRFLKHEKAGHENDAVQPQENWLIRSFEKVFNRLLASYTRALDWSLAHRTTML 539 Query: 530 LVGAVVLAAIVVLFAGTRRELAPTEDQGAIIVVTKAPQYAGVGYTARYAQQIEKLFESIP 589 ++ A LF + PTED G I V + PQ A + + + ++ P Sbjct: 540 VLAAGTFVLTAYLFITIPKGFFPTEDIGQISVTIEGPQDASYPTMVKLVTAVGTIIQNDP 599 Query: 590 EFDSSFMNIGDYAGGQNMMIGGAILKDWSERKRSATDIQSQIQAAGGAIDGET--LTAVQ 647 +++ M D G NM +G LK + R+ ++ ++A A+ G T LT VQ Sbjct: 600 NVETATMRTRDSNVG-NMFVG---LKPRTAREPMDAVLRG-LRAKVKAVPGVTVYLTPVQ 654 Query: 648 LPPLPGSSGGLPVQMVLRS--PDDFKMLYETGEKIKNAAYASGLFLYAQNDLSYDSPQAH 705 L G + Q VL+S D+ + EKI+ A G F+ +D QA Sbjct: 655 NLRLGGRTSKSQFQYVLQSVRADELNVW---AEKIQAEMRADGSFIDVTSDSQLKGLQAV 711 Query: 706 ITIDNAKASQMGLSMQSIADTLAVLVGENYVNRFNFHDRSYDVIPQVRGSERMTPEDIGR 765 + I+ +A++ G+ + I L G+ V+ SY VI Q R D+ + Sbjct: 712 VDINRDRANEAGVGIADIRTALYSAYGDRQVSTIYTSSNSYSVILQDESVGRQDESDLSK 771 Query: 766 FYVKASSGAMVPLSTVIQVEMRPQANQLAQFNQMNSTTLELLPAPGVSMGEAV----AFL 821 Y+++ +G +VPL +V V+ + Q+ + T+ APG+ +G+A Sbjct: 772 IYLRSKTGVLVPLLSVATVKRTAGPISVNHQGQLQAITISFNLAPGIPLGDATRKVDQIK 831 Query: 822 QSQPLPPGTSVDWLSDSRQFVQEGNRLLVSFCFALVVIFLVLAAQFESLRDPLVILVTVP 881 + LP ++ D+ F + ALVVI+++L +ES P+ IL +P Sbjct: 832 DAISLPSSIVTNYAGDAAVFQSSQASQIALVVLALVVIYILLGVLYESYIHPVTILAGLP 891 Query: 882 LAVCGALVPLWLGYATLNIYTQIGLVTLIGLISKHGILMVTFANHIQHHENLSRIDAIEK 941 A GAL+ L + L + IG++ LIGL+ K+ I+M+ FA Q + L+ ++AI Sbjct: 892 SAAVGALLTLRIFGFELTMIAMIGILLLIGLVKKNAIMMIDFALAAQREQGLTPLEAIRT 951 Query: 942 AAAVRMRPVLMTTAAMVAGLVPLLFANGAGSASRFSIGIVVVMGMMIGTFFTLFVLPTIY 1001 A +R RP++MTT A G +P+ GAG+ R +G+ VV G+M+ TL + P IY Sbjct: 952 ACILRFRPIMMTTLAAAVGALPIALGLGAGAELRQPLGLAVVGGLMVSQVITLLITPVIY 1011 Query: 1002 SFIAK 1006 F+ + Sbjct: 1012 LFLDR 1016 >gi|134093332|ref|YP_001098407.1| putative acriflavin resistance/multidrug efflux transporter AcrB [Herminiimonas arsenicoxydans] Length = 1024 Score = 288 bits (738), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 261/1021 (25%), Positives = 474/1021 (46%), Gaps = 66/1021 (6%) Query: 34 VRQYPYLENATITISTMLPGATQDVMQGFVTTPISQSIATASGIEYLSSTTKQGRSEIKA 93 V+ +P +E +T+S L GA ++ V I S+AT G++ + + G + Sbjct: 19 VQDFPDIELPIVTVSAALSGAAPAQLETEVARKIEDSVATLQGVKNIYTKVLDGLVTVTV 78 Query: 94 RLVLNANADRTMTEILAKVQQVKYQLPAGVTDPVISKSTEGGTAVQYI---AFYSNTLSI 150 +L N + ++ V V+ LPA + DP ++K++ G V A + L Sbjct: 79 EFILEKNLSDAVNDVRDAVASVRADLPAELRDPTVTKASTAGRVVLTFTAAAAPGSALDE 138 Query: 151 PQVTDFASRVAQPLLTSIPGVASADVFGGQALAMRIWIDPVRLAAHGLSAGEISAALRAN 210 +++ F + ++PG+ + GG +R+ +D ++AA ++A ++S L+ Sbjct: 139 QELSWFVDNTVSKAILAVPGIGAVKRVGGVTREVRVELDTAKMAALNVAAVDVSRRLKLV 198 Query: 211 NVQSAPG-------QLKSSLTVTNISAATDLRGVDDFRQMVVKSSPAGGIVRLSDVATIE 263 Q APG +S T+ + A +L +D G +RL VAT+ Sbjct: 199 Q-QEAPGGRGDVSGAEQSVRTIATVQTAAELAAMD-------IPLADGHHIRLDRVATVT 250 Query: 264 VGGQNYNNLSFASGVPAIFVALQPTPDGNPLEIVKRANALLPKIRAMAPPGLTVAPNYDV 323 + + G + + T + LE+ + A + ++ P + D Sbjct: 251 DTIAERRSSASQDGKTVVGFEIFRTKGASELEVANGSRAAVAALQERYP-NVVFKLAIDN 309 Query: 324 ARFVNASIEEVQHTLVEAIAIVIVVIFLFLGTFRAVIIPVVTIPLSLVGTAALMLACGFS 383 A+ V + E L E + ++V++ FL +RA ++ +PLS++ T + G++ Sbjct: 310 AKPVEENFEASMELLYEGAFLAVLVVWWFLRDWRATLVAAAALPLSVIPTFLGLAYFGYT 369 Query: 384 INLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGLSPVRAALLGAREIVGPVIAMTITLA 443 +N++TLL++ L +G++VDDAIV +ENI RH+ G +P++AA+ A EI VIA T L Sbjct: 370 LNMVTLLSLALVVGVLVDDAIVEIENISRHLRMGKTPMQAAMEAADEIGMAVIATTFALV 429 Query: 444 AVYAPIGMMGGLTGALFKEFAFTLAGSVIVSGVVALTLSPVMSSMLLS----SRQGEGRL 499 AV+ P M G+ G FK+F +T +++ S +VA L+P+M++ +L + +G L Sbjct: 430 AVFLPTAFMAGIPGLFFKQFGWTAVLAILASLLVARLLTPMMAAYILKPTAHREEKDGWL 489 Query: 500 AKRIEHSMEALTAIYQRILAH--TLAARGAVLLVGAVVLAAIVVLFAGTRRELAPTEDQG 557 +R +M + L H T A + G+++L + +L G P D+ Sbjct: 490 MQRYLKTM-------RWCLTHRLTTAIASGIFFFGSIML--VPLLPTG----FVPAADRA 536 Query: 558 AIIVVTKAPQYAGVGYTARYAQQIEKLFESIPEFDSSFMNIGDYAGGQNMMIGG------ 611 + + P + + T + + S F +IG + G G Sbjct: 537 QTQINVELPPGSTLAETTTVVEAVRTKIAENKNIKSVFASIGGGSSGDAFAPGASAEARR 596 Query: 612 AIL----KDWSERKRSATDIQSQIQAAGGAIDGETLTAVQLPPLPGSSGGLPVQMVLRSP 667 A+L S+RK +I++QI+ A I G T PP G+ +Q+VLRS Sbjct: 597 AVLTITTTHRSDRKEKMAEIEAQIRTAIADIPGARFTVG--PP----DTGVKMQLVLRSE 650 Query: 668 DDFKMLYETGEKIKNAAYASGLFLYAQNDLSYDSPQAHITIDNAKASQMGLSMQSIADTL 727 D +L T +K++ + S P+ + D+A+A+ +G++ SI +T+ Sbjct: 651 DPVALLT-TAQKVERELRTLKGIGNVNSSASLVRPEIIVRPDSARAADLGVTAASIGETV 709 Query: 728 AVLVGENY---VNRFNFHDRSYDVIPQVRGSERMTPEDIGRFYVKASSGAMVPLSTVIQV 784 V +Y + + N +R + ++ R I R V +G ++ L V V Sbjct: 710 RVATAGDYDTSLPKMNLSERQVPIRVKLPDDVRADLSAIERLTVPGKNGPVM-LGNVATV 768 Query: 785 EMRPQANQLAQFNQMNSTTLEL---LPAPGVSMGEAVAFLQSQPLPPGTSVDWLSDSRQF 841 M Q+ + N+ + T ++ + G EA A Q LPP + L D+++ Sbjct: 769 TMESGPAQIDRLNRSRNVTFDVELGTRSLGDLNAEARALPTLQNLPPAVKIAELGDAQEM 828 Query: 842 VQEGNRLLVSFCFALVVIFLVLAAQFESLRDPLVILVTVPLAVCGALVPLWLGYATLNIY 901 N ++ ++ I+ VL F+ P+ IL +PL++ GA V L L + L++ Sbjct: 829 QALFNSFGLAMAIGVLCIYGVLVLLFKDFMQPVTILAALPLSIGGAFVALLLTRSALSMP 888 Query: 902 TQIGLVTLIGLISKHGILMVTFANHIQHHENLSRIDAIEKAAAVRMRPVLMTTAAMVAGL 961 + IGL+ L+G+++K+ IL+V +A + ++R+DA+ A R RP++MTT AM AG+ Sbjct: 889 SMIGLIMLMGIVTKNSILLVDYA-ILARKAGMNRVDALVDACHKRSRPIVMTTIAMGAGM 947 Query: 962 VPLLFANGAGSASRFSIGIVVVMGMMIGTFFTLFVLPTIYSFIAK-DH--RALAQSARAR 1018 +PL + R + I V+ G++ T +L V+P ++++I +H + + Q AR Sbjct: 948 LPLALGWVGDPSFRSPMAITVIGGLITSTLLSLLVVPAVFTYIDDLEHWLKRMLQKARGM 1007 Query: 1019 E 1019 E Sbjct: 1008 E 1008 >gi|134093795|ref|YP_001098870.1| RND family outer membrane copper/silver/drug transport protein [Herminiimonas arsenicoxydans] Length = 1020 Score = 238 bits (606), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 229/1024 (22%), Positives = 457/1024 (44%), Gaps = 58/1024 (5%) Query: 33 PVRQYPYLENATITISTMLPGATQDVMQGFVTTPISQSIATASGIEYLSSTTKQGRSEIK 92 P+ P L + + I PG +++ VT P++ ++ G + + + G S + Sbjct: 5 PLDALPDLSDTQVIIRAQYPGKAPQIVEDQVTYPLTTALLAVPGAKTVRGYSFFGDSFVY 64 Query: 93 ARLVLNANADRTMTEILAKVQQVKYQLPAGVTDPVISKSTEGGTAVQYIAFYS------- 145 + + +L + QV+ +LP GV ++ GT V +I Y+ Sbjct: 65 VLFDDATDQYWARSRVLEYISQVQSRLPQGVR----AELGPDGTGVGWIFEYALVDRTGH 120 Query: 146 NTLSIPQVTDFASRVAQPLLTSIPGVASADVFGGQALAMRIWIDPVRLAAHGLSAGEISA 205 N LS Q+ + L ++P VA GG ++ +DP +L A G+S ++ Sbjct: 121 NDLS--QLRTLNDWFLKFELKTVPDVAEVASIGGMVKQYQVILDPDKLRAFGISHAKVLD 178 Query: 206 ALRANNVQSAPGQLKSSLTVTNISAATDLRGVDDFRQMVVKSSPAGGIVRLSDVATIEVG 265 AL N +S ++ + T + + LR ++DFR +++ ++ AG V L DVAT+ +G Sbjct: 179 ALAKANQESGGSVVEMAETEYMVRSHGYLRSLEDFRNVLLNANDAGTPVLLRDVATVRIG 238 Query: 266 GQNYNNLSFASGVPAIFVALQPTPDG-NPLEIVKRANALLPKIRAMAPPGLTVAPNYDVA 324 + ++ +G + + G N LE +K L +++ P G+ V YD + Sbjct: 239 PEMRRGIAELNGEGEVAGGVVVMRSGKNALETIKAVKTKLATLQSSLPKGVEVVTTYDRS 298 Query: 325 RFVNASIEEVQHTLVEAIAIVIVVIFLFLGTFRAVIIPVVTIPLSLVGTAALMLACGFSI 384 + + +++ ++ L+E +V +V +FL R+ ++ ++++PL ++ +M G + Sbjct: 299 KLITSAVTNLRDKLIEEFVVVALVCAIFLFHLRSALVAIISLPLGVLAAFIVMRYQGVNA 358 Query: 385 NLLTLLAMVLAIGLVVDDAIVVVENIHRHIE---------EGLSPVRAALLGAREI-VGP 434 NL++L + +A+G +VD AIV++EN H+H+E E + R L+ I VGP Sbjct: 359 NLMSLGGIAIAVGAMVDAAIVMIENAHKHLEAYTHAHPNQEISASERWDLIAESAIEVGP 418 Query: 435 VIAMTITLAAV-YAPIGMMGGLTGALFKEFAFTLAGSVIVSGVVALTLSPVMSSMLLSSR 493 + ++ + + + P+ + G LF A+T ++ + +A+TL PV+ ++ Sbjct: 419 ALFFSLLIVTLSFIPVFALEAQEGKLFAPLAYTKTYTLAAAAGLAITLIPVLMGYMI--- 475 Query: 494 QGEGRLAKRIEHSM-EALTAIYQRILAHTLAARGAVLLVGAVVLAAIVVLFAGTRRELAP 552 GR+ + + L Y+ +L +LA +++ + LA V+ + E P Sbjct: 476 --RGRIPSEASNPINRVLIRAYRPVLNASLAHPKWTIVIAFIALALTVIPLSKLGGEFLP 533 Query: 553 TEDQGAIIVVTKAPQYAGVGYTARYAQQIEKLFESIPEFDSSFMNIGDYAGGQN----MM 608 D+G ++ + A + QQ ++L +++PE + F G + M Sbjct: 534 PLDEGDLLYMPSALPGLSASKASELLQQTDRLIKTVPEVATVFGKAGRAESATDPAPLEM 593 Query: 609 IGGAILKDWSERKRSATDIQSQIQAAGGAIDGETLTAVQLPPLPGS----SGGLPVQMVL 664 I ++ R+ I+ + L+ V +PP+ S G+ + + Sbjct: 594 FETTIQFKPKDQWRAGMTSAKLIEELDRIVKVPGLSNVWVPPIRNRIDMLSTGIKTPVGV 653 Query: 665 R-SPDDFKMLYETGEKIKNAAYASGLFLYAQNDLSYDSPQAHITIDNAKASQMGLSMQSI 723 + S D + + +I+ A + I ID AKA++ GL++ + Sbjct: 654 KVSGADLGQIDKIATQIEAVVKKVPGVTSALAERVSGGRYIDIDIDRAKAARYGLAVTDV 713 Query: 724 ADTLAVLVGENYVNRFNFHDRSYDVIPQVRGSERMTPEDIGRFYVKASSGAMVPLSTVIQ 783 ++ +G + + + + + R + + + F + GA V L + Sbjct: 714 QSVISSAIGGENIGEVVDGRQRFPINVRYPQDYRNSVQTLRDFPIVTDRGAQVRLGDITN 773 Query: 784 VE-------MRPQANQLAQFNQMNSTTLELLPAPGVSMGEAVAFLQSQPLPPGTSVDWLS 836 ++ +R + +L+ + ++ +L A VA + LPPG ++ W Sbjct: 774 IKVADGPPMIRSENARLSGWVYVDVRGTDLHTA---VKAMQVAVAKEVKLPPGYAIGWSG 830 Query: 837 DSRQFVQEGNRLLVSFCFALVVIFLVLAAQFESLRDPLVILVTVPLAVCGALVPLWLGYA 896 + +L L VI ++L F S+ + L++++TVP A+ G +WL Sbjct: 831 QFEYLERAAAKLQTVIPLTLGVILILLYLAFRSVSEALLLMLTVPFALIGGFWFVWLLGH 890 Query: 897 TLNIYTQIGLVTLIGLISKHGILMVTFANH-----IQHHENLSR---IDAIEKAAAVRMR 948 +++ T +G + L GL ++ G++M+ + + +Q LS+ +AI + A +R+R Sbjct: 891 AVSVATAVGFIALAGLAAEFGVVMLVYLRNSLNQRLQSGLPLSKELIAEAIREGAVLRVR 950 Query: 949 PVLMTTAAMVAGLVPLLFANGAGSASRFSIGIVVVMGMMIGTFFTLFVLPTIYSFIAKDH 1008 P MT A ++ GL+P++F +GAGS I +V GM+ +LFV+P + + + Sbjct: 951 PKAMTVAVILGGLIPIMFGSGAGSEVMQRIAAPMVGGMITAPLLSLFVIPAAWRLLQERK 1010 Query: 1009 RALA 1012 LA Sbjct: 1011 LRLA 1014 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.135 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,700,348 Number of extensions: 64835 Number of successful extensions: 351 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 279 Number of HSP's successfully gapped: 16 Length of query: 1030 Length of database: 1,000,347 Length adjustment: 91 Effective length of query: 939 Effective length of database: 700,502 Effective search space: 657771378 Effective search space used: 657771378 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)