BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4330.p (484 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095881|ref|YP_001100956.1| outer membrane transport protei... 154 9e-39 gi|134095560|ref|YP_001100635.1| outer membrane transport protei... 148 4e-37 gi|134094170|ref|YP_001099245.1| putative outer membrane protein... 142 5e-35 gi|134095761|ref|YP_001100836.1| putative outer membrane transpo... 139 2e-34 gi|134095533|ref|YP_001100608.1| putative RND efflux system, out... 115 5e-27 >gi|134095881|ref|YP_001100956.1| outer membrane transport protein involved in copper (silver) tolerance [Herminiimonas arsenicoxydans] Length = 474 Score = 154 bits (389), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 133/462 (28%), Positives = 224/462 (48%), Gaps = 12/462 (2%) Query: 27 IVIVTAIANTGCASGPDYHLPASPRVAVGTFVSKPANTDTAAPLPAHWWKLYNDPALDQL 86 + ++ A + C+ P Y P +P A S A+ A W + D L L Sbjct: 7 LTVLAASVLSACSMAPKYTRPDAPVAADYPAASAAADKQQRAH-ETGWRNFFPDQRLQAL 65 Query: 87 VQEALTANTNLRVTLANLDRARAVYKEARGGLYPSSNLSISPSYGRDQTTWTGTGQAPTQ 146 + AL N +LRV ++ ARA Y L P+ N + + S R + + TG Sbjct: 66 IGAALANNRDLRVAALRIEEARAQYNIQSADLLPNLNGTFTGSRARTPASISPTGIDSVS 125 Query: 147 LSYNGGIDI-SYEVDLFGRVKRDIEAARDDTEAVAAAHDAAKVVVVADTTKAYLDACTYG 205 +Y G+ + S+E+D FGRV +AA A A AA + +VA+ KAYL + Sbjct: 126 SAYQVGLSLASFELDFFGRVHSLNDAALASYLATEEAQRAAHISLVAEVAKAYLAERAFA 185 Query: 206 ESIEVAQSSIELAQRSLDLIRRQEHAGAASLLDVERAGVTLAQAQAALPPLQNQKEAALF 265 E + +AQS+++ + DL +++ GA+S LD+ + L A+ A L Q+ AL Sbjct: 186 EQLALAQSTLKSRGTAYDLAKQRFEVGASSALDLRQNEALLQSARVAQVTLARQRAQALN 245 Query: 266 ELAALLGRTPSQVPTSARACTKAPEVAGALPIGEGTALLRRRPDLRQAERQLAADTARIG 325 L L+G+ + P + A + +P G + LL +RPD+R AE+ L A A IG Sbjct: 246 ALTLLVGQPLTGFPEA--QPLSAQNIVTDIPAGLPSDLLTQRPDIRSAEQSLLAANANIG 303 Query: 326 VAVADLYPRVTL----GASASYLRNDFLNGNRTWSFSLGPLISWSFPNTMVVRSRIVQAK 381 A A +PR++L G ++S L N F +G R W+F+ P + + + + ++ Sbjct: 304 AARAAFFPRISLTAGIGTASSTLSNLFDSGTRAWTFA--PQLVLPIFDAGRNSANLTLSE 361 Query: 382 AQAAASLASFDGVVLNALKESEQSLSAYGAAMQQRQALIQARDRADKAFQLAGQRYRAGS 441 + ++A+++ + +A +E +L A +Q A + ++ + +LA QR++ G Sbjct: 362 VRKNIAIANYEKSIQSAFREVSDALVARDLLEEQIDAQRRVQEAQAERLKLADQRFQNGI 421 Query: 442 ISYLDVIVAQSSLVDARSQVAAAD-QRLNSAQVSVFKALGGG 482 S LDV+ AQ L A + A RL +A + ++++LGGG Sbjct: 422 ASSLDVLDAQRELFSAEQDLVQARLLRLTNA-IDLYRSLGGG 462 >gi|134095560|ref|YP_001100635.1| outer membrane transport protein involved toxic tolerance [Herminiimonas arsenicoxydans] Length = 476 Score = 148 bits (374), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 117/415 (28%), Positives = 200/415 (48%), Gaps = 14/415 (3%) Query: 74 WWKLYNDPALDQLVQEALTANTNLRVTLANLDRARAVYKEARGGLYPSSNLSISPSYGRD 133 W + DP L++L+ AL N +LRV + N++RARA Y+ +P+ + S++ + Sbjct: 68 WRDFFVDPKLEELIARALHNNRDLRVAVLNVERARAQYQIQNAERFPALDGSVARNRSGG 127 Query: 134 QTTWTGTGQAPTQLSYNGGIDISYEVDLFGRVKRDIEAARDDTEAVAAAHDAAKVVVVAD 193 G Y+ + S+E+DLFGR+ +AA + A +A++ ++A+ Sbjct: 128 NVVNPGD-------YYSAALSASFELDLFGRIHNLSQAALEQYFAQEEGQRSAQLSLIAE 180 Query: 194 TTKAYLDACTYGESIEVAQSSIELAQRSLDLIRRQEHAGAASLLDVERAGVTLAQAQAAL 253 YL ES +AQ++ + Q + DL+ ++ AGA S LD+ +A T+ A+A + Sbjct: 181 IANTYLTFAADLESQRIAQATFDNQQIAYDLVVKRHRAGAVSGLDLSQAQTTIETARADV 240 Query: 254 PPLQNQKEAALFELAALLGRTPSQVPTSARACTKAPEVAGALPIGEGTALLRRRPDLRQA 313 L L+G P + + LP + +L RRPD+RQ Sbjct: 241 ARYAGLVATDRNALTLLVG-APVEDSLLPQGFDLKVSGIAPLPAQLPSQVLLRRPDVRQT 299 Query: 314 ERQLAADTARIGVAVADLYPRVTL----GASASYLRNDFLNGNRTWSFSLGPLISWSFPN 369 E L A IG A A +P ++L G++++ L F +G + WSF P IS + Sbjct: 300 EHVLRGANANIGAARAAFFPSISLTGSVGSASNQLSGLFDSGTKFWSFV--PQISLPIFH 357 Query: 370 TMVVRSRIVQAKAQAAASLASFDGVVLNALKESEQSLSAYGAAMQQRQALIQARDRADKA 429 +R+ + A A +LA ++ + + +E +L+ Q+RQA D A +A Sbjct: 358 GGALRANLGVATADRDIALARYEKAIQSGFREVADALALTSTLAQRRQAQQALLDAASRA 417 Query: 430 FQLAGQRYRAGSISYLDVIVAQSSLVDARSQVAAADQRLNSAQVSVFKALGGGWE 484 + L+ RY+ G S+L ++ AQ + A+ + AA +V+++K LGGGWE Sbjct: 418 YDLSKARYQYGRDSFLILLDAQRTFYTAQQSLVAAQLAEQGNRVTLYKVLGGGWE 472 >gi|134094170|ref|YP_001099245.1| putative outer membrane protein [Herminiimonas arsenicoxydans] Length = 469 Score = 142 bits (357), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 133/475 (28%), Positives = 210/475 (44%), Gaps = 22/475 (4%) Query: 17 SPFISRRVALIVIVTAI-ANTGCASGPDYHLPASPRVAVGTFVSKPANTDTAAP----LP 71 S F RR L + V + A +GCA D P V PA AP L Sbjct: 3 SRFNFRRTHLALAVAVLFAVSGCAHNIDASKPN---------VEIPATWAEVAPAGIELQ 53 Query: 72 AHWWKLYNDPALDQLVQEALTANTNLRVTLANLDRARAVYKEARGGLYPSSNLSISPSYG 131 WW+ + L L+ ++L + +L + + +A A L+P +S G Sbjct: 54 RDWWRGFGSNELSALIDQSLAGSPDLIIAAERVTQAEITASSAGASLFPLLTVSAGTDTG 113 Query: 132 RDQTTWTGTGQAPTQLSYNGGIDISYEVDLFGRVKRDIEAARDDTEAVAAAHDAAKVVVV 191 + + TG+G A ++ S + ++YEVD++GRV +A A + ++ + Sbjct: 114 QVKPGPTGSGWARSE-STGVALSVNYEVDVWGRVAATTRSANASLNASRYDLETVRLTLT 172 Query: 192 ADTTKAYLDACTYGESIEVAQSSIELAQRSLDLIRRQEHAGAASLLDVERAGVTLAQAQA 251 AY ++VAQ ++ +A++ ++ + GAAS LDV R T+ +A Sbjct: 173 TGVANAYFQTLALRMQLQVAQENLAIAEKLFSIVEARYRFGAASALDVSRQRSTVLAQRA 232 Query: 252 ALPPLQNQKEAALFELAALLGRTPS--QVPTSARACTKAPEVAGALPIGEGTALLRRRPD 309 + PLQ Q+ + LA LLGR P QV + PEV+ LP + L+ RRPD Sbjct: 233 TILPLQVQERQTVSALAILLGRQPQALQVAALSLDTLAIPEVSPGLP----STLITRRPD 288 Query: 310 LRQAERQLAADTARIGVAVADLYPRVTLGASASYLRNDFLN-GNRTWSFSLGPLISWSFP 368 + E QL A +A + A A L P ++L SA L GN +S + I + Sbjct: 289 VASVEAQLLAGSANVAAARAALLPTISLTGSAGNASAALLTLGNPAYSIGIAASIVQTLF 348 Query: 369 NTMVVRSRIVQAKAQAAASLASFDGVVLNALKESEQSLSAYGAAMQQRQALIQARDRADK 428 + +R R+ ++ S+ V ALKE + +L +Q QA I + A++ Sbjct: 349 DGNSLRLRVETNESTRRQLAESYRRTVYTALKEVDDALGNATRNREQEQAQIAIKKEAER 408 Query: 429 AFQLAGQRYRAGSISYLDVIVAQSSLVDARSQVAAADQRLNSAQVSVFKALGGGW 483 A L+ RYR G+ ++ AQ +L A ++ + VFKALGGGW Sbjct: 409 ALALSELRYREGADDLNSLLDAQRTLFAADDKLTQLRLLRLTGTTDVFKALGGGW 463 >gi|134095761|ref|YP_001100836.1| putative outer membrane transport protein involved in copper (silver) tolerance (cusC) [Herminiimonas arsenicoxydans] Length = 502 Score = 139 bits (351), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 129/431 (29%), Positives = 208/431 (48%), Gaps = 21/431 (4%) Query: 63 NTDTAAPLPAHWWKLYNDPALDQLVQEALTANTNLRVTLANLDRARAVYKEARGGLYPSS 122 N D AA W + D L L+ +AL N +LR + ++ ARA Y R +P+ Sbjct: 55 NQDGAAAAAMGWRDYFTDARLQDLIAQALENNRDLRAAVLRVEEARAAYGIQRAEQFPAI 114 Query: 123 NLSISPSYGRDQTTWTGTGQAPTQLSYNGGIDI-SYEVDLFGRVKRDIEAARDDTEAVAA 181 + TG+ Y+ + + S+E+D +GRV+ +AA ++ A Sbjct: 115 AAQAGSERAHVPADLSLTGKPAMSSQYHVSLGLASWEIDFWGRVRSLRDAALENYLASDE 174 Query: 182 AHDAAKVVVVADTTKAYLDACTYGESIEVAQSSIELAQRSLDLIRRQEHAGAASLLDVER 241 A A + +VA +YL C E I +A+ +I + SL + R+ G+ S L++ + Sbjct: 175 ARRAVTISLVAQVANSYLALCELDERIALARLTIASREESLRIFTRRVEVGSTSRLNLTQ 234 Query: 242 AGVTLAQAQAALPPLQNQKEAALFELAALLGRTPSQVPTSARACTKAPEVAGALPIGEG- 300 L+QAQA L+ + L L+G T TS+R E LP+ G Sbjct: 235 VQTLLSQAQALGAQLEQARALQANALILLVGVTLELPATSSR----LDERQMLLPLQPGL 290 Query: 301 -TALLRRRPDLRQAERQLAADTARIGVAVADLYPRVTL----GASASYLRNDFLNGNRTW 355 + LL RRPD+ AE QL A A+IG A A +PR+ L G +++ L F G+R W Sbjct: 291 PSDLLIRRPDIVAAEHQLKAAHAQIGAARAAFFPRIALTGSFGTASAELDGLFAAGSRAW 350 Query: 356 SFSLGPLISWSFPNTMVVRSRIVQAKAQAAASLASFDGVVLNALKESEQSLSAYGAAMQQ 415 +F+ P IS + + + A+A+ ++A+++ + A ++ +L+A QQ Sbjct: 351 TFA--PSISLPLFDAGRRSNNLSLAEARRDLAVANYEKTIQAAFRDVADALAARQWLAQQ 408 Query: 416 ----RQALIQARDRADKAFQLAGQRYRAGSISYLDVIVAQSSLVDARSQVAAADQRLNSA 471 + AL +RA +L+ RY G+ +YLDV+ AQ L+ A Q+ + L S+ Sbjct: 409 LLIAQAALTTQTERA----RLSQLRYDNGAAAYLDVLDAQRDLLVAEQQLVQIRRALLSS 464 Query: 472 QVSVFKALGGG 482 QVS++ ALGGG Sbjct: 465 QVSLYAALGGG 475 >gi|134095533|ref|YP_001100608.1| putative RND efflux system, outer membrane lipoprotein, NodT [Herminiimonas arsenicoxydans] Length = 499 Score = 115 bits (288), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 128/476 (26%), Positives = 201/476 (42%), Gaps = 24/476 (5%) Query: 26 LIVIVTAIANTGCASGPDY----------HLPASPRVAVGTFVSKPANTDTAAPLPAHWW 75 LIV+ + C GPDY + P V T A + A WW Sbjct: 11 LIVVTLIQLISACTVGPDYIRQPPPTETAYTKKDPIVTTADNNGNAQRFHTDAAISADWW 70 Query: 76 KLYNDPALDQLVQEALTANTNLRVTLANLDRARAVYKEARGGLYPSSNLSISPSYGRDQT 135 L++ L + V +L N +L+ A+L ++ + G +P S S + Sbjct: 71 NLFHSADLGEAVDRSLRNNASLQAAQASLKESQHNLQAGYGVFFPQIGGSFSATRQLPSA 130 Query: 136 TWTGTGQAPTQLS--YNGGIDISYEVDLFGRVKRDIEA--ARDDTEAVAAAHDAAKVVVV 191 G+ +P + + G ISY +D+FG +R +EA A+ D + A A + + Sbjct: 131 FRFGSA-SPVGIFNLFTLGAAISYTLDIFGGERRMVEALGAQADYQKYVAL--ATYLTLS 187 Query: 192 ADTTKAYLDACTYGESIEVAQSSIELAQRSLDLIRRQEHAGAASLLDVERAGVTLAQAQA 251 + + Y E Q I Q L + Q G A V LA +QA Sbjct: 188 GNVVNTAIARAAYHAQYEATQQLILRQQEQLAVAENQAAHGIAPYATVLSLRSLLASSQA 247 Query: 252 ALPPLQNQKEAALFELAALLGRTPSQVPTSARACTKAPEVAGALPIGEGTALLRRRPDLR 311 AL + +++ A LA L G T S TS+ + E+ LP+ + L+R+RPD+ Sbjct: 248 ALAVVAQKRDQADHLLANLQGTTASGTYTSSFDLAQL-ELPQDLPLTLPSELVRQRPDVL 306 Query: 312 QAERQLAADTARIGVAVADLYPRVTLGASASYLRNDFLN----GNRTWSFSLGPLISWSF 367 AE QL +A +GVA A L+P +LGA+ + N ++ WS G + Sbjct: 307 AAEAQLHVASAGVGVATAALFPSFSLGANYALGNTKLGNLSDSSSKFWSVGSGVDVPIFQ 366 Query: 368 PNTMVVRSRIVQAKAQAAASLASFDGVVLNALKESEQSLSAYGAAMQQRQALIQARDRAD 427 T + R Q Q A LA++ VL+A ++ L+A Q +A ++ A+ Sbjct: 367 GGTAWHKRRAAQDAYQQA--LANYRQTVLSAFQQVADVLTAIEHDAQAVKAQAESLGAAE 424 Query: 428 KAFQLAGQRYRAGSISYLDVIVAQSSLVDARSQVAAADQRLNSAQVSVFKALGGGW 483 + +L YRAG +SYLDV+ A + ++ A ++F ALGGGW Sbjct: 425 QTLKLIEVNYRAGLVSYLDVLAANTQFYQSKIAYLQALGLRYQDTTALFVALGGGW 480 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.128 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 752,617 Number of extensions: 27578 Number of successful extensions: 131 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 101 Number of HSP's successfully gapped: 7 Length of query: 484 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 399 Effective length of database: 720,272 Effective search space: 287388528 Effective search space used: 287388528 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)