BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4328.p
         (284 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096386|ref|YP_001101461.1| putative transcriptional regula...   123   1e-29

>gi|134096386|ref|YP_001101461.1| putative transcriptional regulator
           [Herminiimonas arsenicoxydans]
          Length = 248

 Score =  123 bits (308), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 123/244 (50%), Gaps = 9/244 (3%)

Query: 24  LALSATSVAKDWENARHQHRKAQLIYSVRGILNCEIEEGVWIVPPQCAVWIPGDLPHAAR 83
           + + ATS  +      H HR+AQL+++  GI+     +G W+VPP  AVW+P  + HA  
Sbjct: 1   MIIGATSYPRGTHLGLHVHREAQLLFASSGIMQVTTPKGRWLVPPARAVWLPPGIEHAVD 60

Query: 84  GAGETECYCLFVEPDAAPDLPKTC-----CTISVSPLLRELILKVAGFAELYPLGGREDR 138
              + E   L V  D     P          ++V PLLRE IL  A F        R + 
Sbjct: 61  VLADIEMRALLVPSDWLATHPDALRLNREFVVTVGPLLRETIL--AAFKHAAN-AKRINL 117

Query: 139 LIAALLDELATAPVEDLHLPMPRDLRLRRLAEMILADPSDKTSKADWAMRIGMSERSMSR 198
           L+   L ELA        +P+P D R RR+A+MILADP++       A   G S R+++R
Sbjct: 118 LVEVALFELAEDEDAATFIPLPNDPRARRVADMILADPANDRELELLAHAAGASARTVTR 177

Query: 199 LLLQEIGMSFGRWRRQLHVILALQRLTKGE-SVQSVALELGYENASGFITMFRKATGKSP 257
           L   E  ++F  WR++  ++ A++ L  G+ S++ +A +LG+ + + F   FR+  G +P
Sbjct: 178 LFSAETNLTFKEWRQRARIMAAVEALGSGKTSIKQLAAQLGFSSVAAFGHAFRQIMGMTP 237

Query: 258 ARYL 261
              +
Sbjct: 238 GEMM 241


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 522,280
Number of extensions: 19461
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 203
Effective length of database: 733,452
Effective search space: 148890756
Effective search space used: 148890756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)