BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4324.p
         (301 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095567|ref|YP_001100642.1| transcriptional regulator CysB-...    63   2e-11
gi|134094120|ref|YP_001099195.1| putative transcriptional regula...    62   3e-11
gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl [...    58   6e-10

>gi|134095567|ref|YP_001100642.1| transcriptional regulator
           CysB-like protein [Herminiimonas arsenicoxydans]
          Length = 313

 Score = 62.8 bits (151), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 113/246 (45%), Gaps = 16/246 (6%)

Query: 22  SLTQAANAVNGPQSVISRQIGQLEKQCGAKLFRRTGRGVV-LTEFGEIVYSRIRPLM--- 77
           +LT+AA A+   Q  +S+ I +LE++ G  +F R G+ +  LTE G  V   +  +M   
Sbjct: 18  NLTEAAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRGLTEPGRAVLKSVEAIMLEI 77

Query: 78  EVADRLADDILTSNNIPIGEVHVGLLPTTVPMFAGRLFKAVQEQFPRVRLHLVEGSSAQL 137
           E   R+ ++    ++   G   +    T       ++ +A  ++FP+VRL L++G+  Q+
Sbjct: 78  EGLKRIGNEFAAHDS---GSFTIATTHTQARYSLPKVVQAFTQKFPKVRLSLLQGNPKQI 134

Query: 138 EEWLDCGRLDMALLLR-----EGMVDSKDEPCLLTTALDLIGWRDAPLLTSGRICFDSLQ 192
            E +   + D+A+        +G++     PC       ++   D PLL S  I  + L 
Sbjct: 135 AEMVLMDQADLAIATEAIANMDGLISL---PC-YQWEHQIVLPLDHPLLKSKSITLEELA 190

Query: 193 DVSLILPAEPHVLRRRLDILARERGVRLNVSVEADTIQLQREIAAAGIGYAIVAAVSGAD 252
              +I        R ++D     R ++ ++ +EA    + +     G+G  I+A ++   
Sbjct: 191 AYPIITYDSAFAGRNKIDHAFNLRNLKPDILLEAIDADVIKTYVELGMGIGIIAGMAFDT 250

Query: 253 DQDDRL 258
           ++D  L
Sbjct: 251 ERDKNL 256


>gi|134094120|ref|YP_001099195.1| putative transcriptional regulator
           [Herminiimonas arsenicoxydans]
          Length = 284

 Score = 62.0 bits (149), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 68/138 (49%), Gaps = 2/138 (1%)

Query: 14  FAKVAELGSLTQAANAVNGPQSVISRQIGQLEKQCGAKLFRRTGRGVVLTEFGEIVYSRI 73
           F  V + GS T+AA++V+  QS IS+QI +LE Q G  L  R+GR V  T  GE +    
Sbjct: 10  FVAVVDTGSFTRAADSVHLTQSTISQQIRRLEMQVGCDLLNRSGRYVTTTLEGERLLRYA 69

Query: 74  RPLMEVADRLADDILTSNNIPIGEVHVGLLPTTVPMFAGRLFKAVQEQFPRVRLHLVEGS 133
             + ++ D   + I  S     GEV +G+    V         A  + +  VRL +  G 
Sbjct: 70  HRIAQLMDEAMEQIAQSAGK--GEVRLGVPEDFVGRALTPTLSAFIDTYSAVRLEVSSGM 127

Query: 134 SAQLEEWLDCGRLDMALL 151
           S +L +    G LD+AL+
Sbjct: 128 SHELWQRFQRGELDLALI 145


>gi|134094079|ref|YP_001099154.1| transcriptional regulator Cbl
           [Herminiimonas arsenicoxydans]
          Length = 308

 Score = 57.8 bits (138), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 106/232 (45%), Gaps = 6/232 (2%)

Query: 22  SLTQAANAVNGPQSVISRQIGQLEKQCGAKLFRRTGRGVV-LTEFGEIVYSRIRPLMEVA 80
           +LT+ AN +   Q  +SRQI +LE++ G  +F R G+ +  LT+ G  + + I  L+  A
Sbjct: 18  NLTEVANVLFTSQPGVSRQIRELEEELGVDIFERNGKRLTGLTDPGRGILTIIDRLLLEA 77

Query: 81  DRLADDILTSNNIPIGEVHVGLLPTTVPMFAGRLFKAVQEQFPRVRLHLVEGSSAQLEEW 140
           + L           IG + V    T        + +A + +FP+VR+ L + S   + EW
Sbjct: 78  ENLQRASQEYAGQEIGTLAVATTHTQARYMLPEVVQAFRAEFPKVRIALQQSSPEHIAEW 137

Query: 141 LDCGRLDMALLLREGMVDSKD---EPCLLTTALDLIGWRDAPLLTSGRICFDSLQDVSLI 197
           +  G+ D+ +   EG+   +D    PC       ++    A LL+   +  ++L    LI
Sbjct: 138 VLSGKADIGIAT-EGLSQFEDLVSFPCYRWHHAIVVPQGHA-LLSHAPVTLEALAKYPLI 195

Query: 198 LPAEPHVLRRRLDILARERGVRLNVSVEADTIQLQREIAAAGIGYAIVAAVS 249
                   R  +D   +   +  ++ + A    + ++  + G+G  IVA+++
Sbjct: 196 TYDLGFTGRGHIDDAFKSADIAPDIVLTAMDSDVIQQYVSLGLGVGIVASMA 247


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 515,031
Number of extensions: 19444
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 3
Length of query: 301
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 220
Effective length of database: 733,452
Effective search space: 161359440
Effective search space used: 161359440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)