BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4322.p
         (304 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096571|ref|YP_001101646.1| LysR family transcriptional reg...   121   5e-29

>gi|134096571|ref|YP_001101646.1| LysR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 319

 Score =  121 bits (303), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 150/312 (48%), Gaps = 14/312 (4%)

Query: 1   MRFNKLDLNLLVALDALLTEMSISRAAEKMNLSQSAMSNALARLRDYFDDELLVLVGRRL 60
           M F  LDLNLL   DA++TE +++RAA  + ++Q A+SNAL RLRD   DEL++     +
Sbjct: 1   MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDALGDELVIRTAHGV 60

Query: 61  EPTPRAEILKDAVHDVLRRIEGSIEAKPAFVPAESHREFRISVSDFTLTVLIPHVLARAR 120
           +PT RA  L   V   L  +E ++     F  + +   FR++++D T  + +P ++    
Sbjct: 61  KPTSRATELWPVVRRALSDLETAVTPD-TFDVSRATTTFRMAMADATAALWLPFLVRAIE 119

Query: 121 AEAPHIRFALLP-QVQDPTHALDRAEVDL-----------LVMPKDFCTPDHPSEELFTE 168
            EAP +   ++P   ++P   L R ++DL           L   ++        E L+T 
Sbjct: 120 KEAPGLNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTG 179

Query: 169 RYVCAVWRESELAQGELSLERYMNAGHVVMVPPGPHSTSLEARMTAQLGFVRRVEVTSFN 228
            YVC + +   LA+ EL+L+ Y  A H+++   G  +  L     +++G  RR+ +T   
Sbjct: 180 EYVCVMRKNHPLAKEELTLDTYCAAHHLLVSFSG-RAKGLMDDALSEVGRERRILLTVNQ 238

Query: 229 FSAMLALVQGTDRIATIFSRLARMLASCFPVELRDSPLPLGEMHQTMQWHRYRTNDPGIE 288
           F     +V  +D I  +   L         +  +D P  L E+H  M WH     +P  +
Sbjct: 239 FFTAGRVVASSDLITVLPRHLIASTGMEEALIAKDLPFSLPEVHVDMLWHERDARNPAHK 298

Query: 289 WLRALFLKSAKE 300
           WLR   + S  +
Sbjct: 299 WLREQLITSTDD 310


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 522,541
Number of extensions: 19895
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 223
Effective length of database: 733,452
Effective search space: 163559796
Effective search space used: 163559796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)