BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4320.p (310 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093619|ref|YP_001098694.1| putative transcriptional regula... 84 1e-17 gi|134095567|ref|YP_001100642.1| transcriptional regulator CysB-... 82 2e-17 gi|134095306|ref|YP_001100381.1| LysR family transcriptional reg... 79 4e-16 gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 70 2e-13 gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 66 2e-12 >gi|134093619|ref|YP_001098694.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 367 Score = 84.0 bits (206), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 80/299 (26%), Positives = 136/299 (45%), Gaps = 18/299 (6%) Query: 5 LQQLEMFCAIVGAGSLGRAANVLGLTQPALSRAIKRLEETVGGTLFERHTTGMHLTQLGQ 64 L+QL++F + S RAA L LTQPA+S +K+LE+ G LFE+ ++LT G Sbjct: 50 LRQLKVFETVARLLSFSRAAEELHLTQPAVSTQVKKLEDHAGLALFEQLGKKIYLTPGGT 109 Query: 65 ALLPHALSLQREAKQARDELDALRGLSKGVIKVGAVGSIASLVLPLAVAGVLAKWP---- 120 LL ++ ++ ++ ++A D + +G++ G + V AV S P + Sbjct: 110 ELLHYSRTIIQQFQEAEDAMTQFKGITGGKLNV-AVISAGDYFFPRLLVEFARSHQGVTL 168 Query: 121 NLRVEIIEGVWDRLAEGLLTHEIDLALGT---SGMETDGVAAIADCCWNDLSYVVAGNDH 177 NL V EG+ ++LA L DLA+ + M+T I + +VA DH Sbjct: 169 NLSVHNREGLLNQLANNL----TDLAIMVRPPTDMDT-----INEPFAPHPYVIVAAPDH 219 Query: 178 PLRGKDKISLAETLEQRWVLTPAGTGPYLHLKETFAKAGLPMPEIAVESRSVTVLKSLVA 237 L K I ++ + + +V+ G+ + +++ F + + IA+E +S +K V Sbjct: 220 HLVSKKNIPMSTLIHEPFVVREKGSDTWHSMEDGFG-SRIDDLNIAMEIKSTETIKQAVI 278 Query: 238 RCGFVGWMSGPMFDTERKAGLIDALPVEGLNAPRTLMAFRRRQGILPTPATRLLDELRN 296 + ++S E +AG + L VEG R+ LP A + L N Sbjct: 279 AGMGISFLSAHTISMELQAGSLTVLDVEGFPVMLNWYVVHRKNKRLPPVAQAFRNFLLN 337 >gi|134095567|ref|YP_001100642.1| transcriptional regulator CysB-like protein [Herminiimonas arsenicoxydans] Length = 313 Score = 82.4 bits (202), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/258 (27%), Positives = 117/258 (45%), Gaps = 6/258 (2%) Query: 4 NLQQLEMFC-AIVGAGSLGRAANVLGLTQPALSRAIKRLEETVGGTLFERHTTGMH-LTQ 61 NL QL A+ +L AA L +QP +S+AI LEE +G +F RH + LT+ Sbjct: 2 NLHQLRFVREAVRQNFNLTEAAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRGLTE 61 Query: 62 LGQALLPHALSLQREAKQARDELDALRGLSKGVIKVGAVGSIASLVLPLAVAGVLAKWPN 121 G+A+L ++ E + + + G + + A LP V K+P Sbjct: 62 PGRAVLKSVEAIMLEIEGLKRIGNEFAAHDSGSFTIATTHTQARYSLPKVVQAFTQKFPK 121 Query: 122 LRVEIIEGVWDRLAEGLLTHEIDLALGTSGM-ETDGVAAIADCCWNDLSYVVAGNDHPLR 180 +R+ +++G ++AE +L + DLA+ T + DG+ ++ C+ +V DHPL Sbjct: 122 VRLSLLQGNPKQIAEMVLMDQADLAIATEAIANMDGLISLP--CYQWEHQIVLPLDHPLL 179 Query: 181 GKDKISLAETLEQRWVLTPAGTGPYLHLKETFAKAGLPMPEIAVESRSVTVLKSLVARCG 240 I+L E + + + F L P+I +E+ V+K+ V Sbjct: 180 KSKSITLEELAAYPIITYDSAFAGRNKIDHAFNLRNLK-PDILLEAIDADVIKTYVELGM 238 Query: 241 FVGWMSGPMFDTERKAGL 258 +G ++G FDTER L Sbjct: 239 GIGIIAGMAFDTERDKNL 256 >gi|134095306|ref|YP_001100381.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 294 Score = 78.6 bits (192), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 72/296 (24%), Positives = 133/296 (44%), Gaps = 3/296 (1%) Query: 1 LSFNLQQLEMFCAIVGAGSLGRAANVLGLTQPALSRAIKRLEETVGGTLFERHTTGMHLT 60 + F+L L +F V GS+ A L+ + S I+ +EE +G L R G+ T Sbjct: 1 MRFDLTDLTLFLHSVETGSITAGAERSHLSLASASARIRGMEEMLGIPLLIRGQRGVEAT 60 Query: 61 QLGQALLPHALSLQREAKQARDELDALRGLSKGVIKVGAVGSIASLVLPLAVAGVLAKWP 120 +G+AL+ HA R+ ++ R EL KG +++ + + LP A++ LA P Sbjct: 61 PVGKALVHHARIALRQQERMRGELSEYAQGLKGHVRIMSNTVSLTEFLPEALSNFLATHP 120 Query: 121 NLRVEIIEGVWDRLAEGLLTHEIDLALGTSGMETDGVAAIADCCWNDLSYVVAGNDHPLR 180 N+ +++ E + + L ID+ + + ++ G +D +V DHPL Sbjct: 121 NVNIDLEERLSFEIVSALTEGTIDIGILSDSVDFSGFETFP--FHDDRLTLVVARDHPLS 178 Query: 181 GKDKISLAETLEQRWVLTPAGTGPYLHLKETFAKAGLPMPEIAVESRSVTVLKSLVARCG 240 + I AETL+ ++ G+ +L E AK G + V RS + ++ R Sbjct: 179 VRSSIHFAETLDYDFIGLQEGSALQEYLSEQAAKMGRRF-KYRVRLRSFDAVCRMIERNV 237 Query: 241 FVGWMSGPMFDTERKAGLIDALPVEGLNAPRTLMAFRRRQGILPTPATRLLDELRN 296 +G + + +K+ I + + + R L+ + LP A +L++++R Sbjct: 238 GIGVVPEAAANRLKKSMDIHTVSILDSWSSRKLIICAQSYSDLPIHAQQLIEQIRT 293 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 70.1 bits (170), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 19/248 (7%) Query: 1 LSFNLQQLEMFCAIVGAGSLGRAANVLGLTQPALSRAIKRLEETVGGTLFERHTTGMHLT 60 ++ L+QL F + GRAA L +TQP LS+AI+ LE +G LF R + + LT Sbjct: 1 MNIELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALT 60 Query: 61 QLGQALLPHALSLQREAKQARDELDALRGLSKGV---IKVGAVGSIASLVLPLAVAGVLA 117 G ALLP A QR +Q D +R ++ G + + V + VLP + Sbjct: 61 PAGSALLPEA---QRILQQTAALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREFRE 117 Query: 118 KWPNLRVEIIEGVWDRLAEGLLTHEIDLAL------GTSGMETDGVAAIADCCWNDLSYV 171 +P + +++ E D + L+ ID+ L + ++ D + +++ L Sbjct: 118 SYPGVEIDLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLSE----PLILA 173 Query: 172 VAGNDHPLRGKDKISLAETLEQRWVLTPAGTGPYLH--LKETFAKAGLPMPEIAVESRSV 229 L+GK ++L E ++ P P H + + AGL P I E+ + Sbjct: 174 APKGLKALKGKQSVALQSLAELPLIIFPRRIAPAFHDAILSCYRDAGL-TPHIGQEAIQM 232 Query: 230 TVLKSLVA 237 + LV+ Sbjct: 233 QTIIGLVS 240 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 65.9 bits (159), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 16/183 (8%) Query: 3 FNLQQLEMFCAIVGAGSLGRAANVLGLTQPALSRAIKRLEETVGGTLFERHTTGMHLTQL 62 L +L+ A+ G AA + QP LS AIK+LE+ +G TLFER + + +T L Sbjct: 1 MTLTELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 60 Query: 63 G-------QALLPHALSLQREAKQARDELDALRGLSKGVIKVGAVGSIASLVLPLAVAGV 115 G + +L +++ AKQ +D L G ++G + +IA +LP V + Sbjct: 61 GVQIVAQAERVLEQTAAIKEIAKQNKDPL-------VGPFRLGIIYTIAPYLLPPLVKAM 113 Query: 116 LAKWPNLRVEIIEGVWDRLAEGLLTHEIDLALGTSGMETDGVAAIADCCWNDLSYVVAGN 175 + + P + + + E +L E L EID A+ + G+ + +++ V Sbjct: 114 IERVPQMPLVLQENFTVKLLEQLRQGEIDAAIVALPIPDQGL--LVQPVYDEPFVVAVPK 171 Query: 176 DHP 178 HP Sbjct: 172 HHP 174 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 591,640 Number of extensions: 24546 Number of successful extensions: 117 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 13 Length of query: 310 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 229 Effective length of database: 733,452 Effective search space: 167960508 Effective search space used: 167960508 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)