BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4319.p (532 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094465|ref|YP_001099540.1| acetolactate synthase III large... 108 6e-25 gi|134093610|ref|YP_001098685.1| glyoxylate carboligase [Hermini... 90 3e-19 gi|134093631|ref|YP_001098706.1| putative oxalyl-CoA decarboxyla... 81 1e-16 >gi|134094465|ref|YP_001099540.1| acetolactate synthase III large subunit [Herminiimonas arsenicoxydans] Length = 579 Score = 108 bits (271), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 135/539 (25%), Positives = 219/539 (40%), Gaps = 60/539 (11%) Query: 27 VFANPGSTELPMFRDF--PADFRYVLGLQEAVVVGMADGYAQASGKAALVNLHSAAGVGN 84 VF PG L ++ F+++L E V AD Y+++S K + + S GV N Sbjct: 31 VFGYPGGAVLYIYDAIYNQDKFQHILVRHEQAAVHAADAYSRSSKKVGVSIVTSGPGVTN 90 Query: 85 AMGNIFTAFRNRTPLIITAGQQARSILPFDPFLAASHATELPKPYVKWSIEPARAADVPR 144 A+ + TA+ + P++I +GQ + D F + +P VK + D+ Sbjct: 91 AVTGLATAYMDSIPMVIISGQVPTHGIGLDAFQECD-TVGITRPCVKHNFLVKDVRDLAA 149 Query: 145 ALARAYHIAMQEPRGPVFVSIPVDDWDQPGELLEATEVTTRSRPEPDA-----IAALATA 199 + +A++IA GPV V IP D EV RS D I Sbjct: 150 TMKKAFYIATTGRPGPVLVDIPKDVSMHKCMFSYPKEVEMRSYKPVDKGHTGQIRKAVQL 209 Query: 200 LHRSERPAIVVGSELDRAGAWDEVLRLAEVSNARVFVAPMSSRCSFPEDHHLFA-GFLPA 258 L ++ERP I G + A A +E+ +L + + FP + L G A Sbjct: 210 LLQAERPMIYTGGGVILANASEELTQLVD-------------KLGFPCTNTLMGLGSYRA 256 Query: 259 MREKIVQL--LNG---------HDLIFVAGAPAFTYHVEGSGPHLPSGAQLYQLID-DPV 306 +K V + ++G H + +A F V G+ H S + ID DP Sbjct: 257 SSDKFVGMPGMHGTYEANMAMQHSDVMIAIGARFDDRVIGNPKHFSSNPRKIIHIDIDPS 316 Query: 307 TASW-TPSGTAIVGNIQLGLQDLLAQLLKHPPAARPLPPA-------------RAARPRA 352 + S IVGN++ L +LLAQL A+P A R Sbjct: 317 SISKRVKVDIPIVGNVKEVLVELLAQL--DAAEAKPNSVALSNWWKQINEWRKRDCLKFE 374 Query: 353 EPETPMSAAFAMQTLAEVRAAEDIVVEEAPGSRPTMQAYLPFTRPGTFYTMASGGL---G 409 T + +Q + +V + V + + Y PF +P + + SGGL G Sbjct: 375 NSTTVIKPQSVIQKVWDVTKGDAFVTSDVGQHQMWAAQYYPFDKPRRW--INSGGLGTMG 432 Query: 410 YGMPAAVGVALARPQQRVIGLIGDGSAMYSPQAIYSAVQLRLPLTFVIINNRRYAALQDF 469 G+P A+GV +A P V + G+ S Q + + Q L +++NNR ++ + Sbjct: 433 VGLPYAMGVQMANPDATVACITGEASIQMCIQELATCKQYHLTPKIILLNNRFLGMVRQW 492 Query: 470 APV-FGFGAGDVVQGTDLPGLDFVALAQSMGCQGVRVSEPGELAAALQTAISSNEPRLV 527 + +G + + LP DF L ++ G G+ + P ++ AL+ A + + RLV Sbjct: 493 QQLEYGSRYSESYMDS-LP--DFDKLVEAYGHVGMTIENPADVDGALKEAFAMKD-RLV 547 >gi|134093610|ref|YP_001098685.1| glyoxylate carboligase [Herminiimonas arsenicoxydans] Length = 582 Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 126/555 (22%), Positives = 224/555 (40%), Gaps = 37/555 (6%) Query: 9 ITVRDAVLDLMRRLDMTSVFANPGSTELPMFRDFPAD--FRYVLGLQEAVVVGMADGYAQ 66 +T A + +M++ + F PG+ P + +++L MA+GY + Sbjct: 4 MTAAQAAVWVMQKEGIDQAFGVPGAAINPFYSAMQKQGTIKHILARHVEGATHMAEGYTR 63 Query: 67 A-SGKAALVNLHSAAGVGNAMGNIFTAFRNRTPLIITAGQQARSILPFDPFLAASHATEL 125 A +G + S G + + +++A + P++ GQ R+ L + F A + + Sbjct: 64 AKAGNIGVALATSGPGGTDMITGLYSAIADSIPILCVTGQAPRARLHKEDFQAVDIES-I 122 Query: 126 PKPYVKWSIEPARAADVPRALARAYHIAMQEPRGPVFVSIPVD----DWDQPGELLEATE 181 KP KWS+ A VP+ +A+HI GPV + +P D + + +L E Sbjct: 123 SKPVTKWSVMVREPALVPQVFQQAFHIMRSGRPGPVLIDLPFDVQVAEIEFDPDLYEPLP 182 Query: 182 VTT--RSRPEPDAIAALATALHRSERPAIVVGSELDRAGAWDEVLRLAEVSNARVFVAPM 239 V SR + I + L+ +ERP ++ G + + A + AE+ N V V + Sbjct: 183 VYKPAASRKQ---IERAISMLNEAERPLLISGGGVINSDASALMQEFAELVNVPV-VPTL 238 Query: 240 SSRCSFPEDHHLFAGFL---PAMREKIVQLLNGHDLIFVAG---APAFT-----YHVEGS 288 + P+DH L G + + R +L D F G A FT + + Sbjct: 239 MGWGTVPDDHPLMVGMVGLQTSHRYGNATML-ASDFAFGIGNRWANRFTGSIDVFTKDRK 297 Query: 289 GPHLPSGAQLYQLIDDPVTASWTPSGTAIVGNIQLGLQDLLAQLLKHPPA--ARPLPPAR 346 H+ + P + +G A+ I++ + A LK+ A A R Sbjct: 298 FVHIDIEPTQIGRVFGPDLGITSDAGAALKLMIEVAKELKAAGKLKNRDAWLAECQERKR 357 Query: 347 AARPRAEPE-TPMSAAFAMQTLAEVRAAEDIVVEEAPGSRPTMQAYLPFTRPGTFYTMAS 405 + + + TP+ Q + EV V S+ +L + + Sbjct: 358 TMLRKTDFDVTPIKPQRVYQEMNEVFGKTARYVSNIGLSQIAAGQFLHVYKERNWINCGQ 417 Query: 406 GG-LGYGMPAAVGVALARPQQRVIGLIGDGSAMYSPQAIYSAVQLRLPLTFVIINNRRYA 464 G LG+ +PAA+GV A P ++ + GD + + + + Q LP V++NN Sbjct: 418 AGPLGWSVPAALGVRAADPTSEIVAITGDYDFQFLIEELAAGAQFNLPYIHVLVNNSYLG 477 Query: 465 ALQDFAPVFGFG-----AGDVVQGTDLP--GLDFVALAQSMGCQGVRVSEPGELAAALQT 517 ++ +F A D + T+ G+D V + + GC+ +RV P ++ AL+ Sbjct: 478 LIRQAQRMFTMDYCVSLAFDNINSTENASYGVDHVKVTEGFGCKAIRVYNPDDIQPALRK 537 Query: 518 AISSNEPRLVEVVVR 532 A + V VVV Sbjct: 538 AQEWIKEFKVPVVVE 552 >gi|134093631|ref|YP_001098706.1| putative oxalyl-CoA decarboxylase [Herminiimonas arsenicoxydans] Length = 570 Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 129/556 (23%), Positives = 214/556 (38%), Gaps = 52/556 (9%) Query: 8 GITVRDAVLDLMRRLDMTSVFANPGSTELP------MFRDFPADFRYVLGLQEAVVVGMA 61 G+ + D LM L+M + G +P M++ F Q A Sbjct: 11 GVELTDGFHLLMEALEMNGITNIYGLLGIPVTEIGRMWQARGNKFFSFRNEQNAGYAASV 70 Query: 62 DGYAQASGKAALVNLHSAAGVGNAMGNIFTAFRNRTPLIITAGQQARSILPFDPF-LAAS 120 GY + K + SA G N + + A N P+I+ +G R ++ Sbjct: 71 AGYL--TKKPGICVTVSAPGFLNGLTALANATTNCFPMILISGSSEREVVDLQQGDYEEM 128 Query: 121 HATELPKPYVKWSIEPARAADVPRALARAYHIAMQEPRGPVFVSIP-------VDDWDQP 173 + +P+ K S R D+ A+ RA A+ G V++ IP + + Sbjct: 129 DQLNIARPHCKASFRINRTEDIGVAVVRAIRTALSGRPGGVYLDIPARLFSTTMSAEEGK 188 Query: 174 GELLEATEVTTRSRPEPDAIAALATALHRSERPAIVVGSELDRAGAWDEVLRLAEVSNAR 233 L + P PDA+A + +++P I++G A ++ L E + Sbjct: 189 KSLFVPVDPAPAQIPGPDAVARAVALIKGAKKPLILLGKGAAYAQCDADIKALIEETG-- 246 Query: 234 VFVAPMSSRCSFPEDHHLFAGFLPAMREKIVQLLNGHDLIFVAGAPAFTYHVEGSGPHLP 293 + PMS D H A R ++Q D++ + GA G G Sbjct: 247 IPFTPMSMAKGLVSDIHPQCA--AAARSMVLQ---ESDVVVLIGARLNWLLAHGKGKTWG 301 Query: 294 SGAQLYQL-IDDPVTASWTPSGTAIVGNIQLGLQDLLAQL--LKHPPAARPLPPARAARP 350 + Q+ I S P +VG+++ + L A L + P RA+ Sbjct: 302 GAKKFVQIDIQANEMDSNVPIAAPLVGDVESCVNALRAGLKGMTKPTEWMDAIAERASGS 361 Query: 351 RAEPETPMSAAF-AMQTLAEVRAAEDIV--------VEEA----PGSRPTMQAYLPFTR- 396 +A+ T ++ A M + A D++ V E +R + Y P R Sbjct: 362 KAKLGTKLATATPIMNYFNSLGAIRDVLKNHQDVTLVNEGANALDNARMIIDQYQPRKRV 421 Query: 397 -PGTFYTMASGGLGYGMPAAVGVALARPQQRVIGLIGDGSAMYSPQAIYSAVQLRLPLTF 455 GT+ M G+G G A V +P V+ + GD + +S I + + LP+T Sbjct: 422 DTGTWGVM---GVGMGSAVAAAVETGKP---VVAVCGDSAFGFSGMEIETITRYNLPVTV 475 Query: 456 VIINNRRYAALQDFAPVFGFGAGDVVQGTDLPGLDFVALAQSMGCQGVRVSEPGELAAAL 515 +I+NN + P A V T P + L QS+G +GVRV+ P EL AL Sbjct: 476 IIMNNGGIYRGDEANP-----AHQVSCMTFNPNTRYDLLMQSVGGEGVRVNTPEELTKAL 530 Query: 516 QTAISSNEPRLVEVVV 531 + ++ S +P L+E ++ Sbjct: 531 EASLKSGKPTLIEAII 546 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,021,533 Number of extensions: 44283 Number of successful extensions: 159 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 152 Number of HSP's successfully gapped: 4 Length of query: 532 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 446 Effective length of database: 716,977 Effective search space: 319771742 Effective search space used: 319771742 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)