BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4317.p
         (459 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093380|ref|YP_001098455.1| putative transporter [Herminiim...   148   4e-37

>gi|134093380|ref|YP_001098455.1| putative transporter
           [Herminiimonas arsenicoxydans]
          Length = 460

 Score =  148 bits (374), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 110/438 (25%), Positives = 212/438 (48%), Gaps = 14/438 (3%)

Query: 13  DIGRVLDEGTFTGFQKMVVILAALSIVMDGFDGQLIGFAIPSLIKEWGVTRNAFAPAVAA 72
           ++   L+    T +Q+ +  + A +   D  D  ++ F + S+  E+G++        ++
Sbjct: 12  NVANRLERLPMTNYQRSLFGIIATAWFFDSMDLGIMTFVLGSIKAEFGLSTAQAGLLASS 71

Query: 73  GLVGMGLGSAFAGLFADRFGRRLAIIGSVFVFGIATSLISLSPDITTIAILRFFAGLGIG 132
             +GM LG+A AG+ AD++GR+     S+  +G+ +     + D+  + I R   G G+G
Sbjct: 72  SFLGMFLGAAIAGMLADKYGRKPVFQWSMVFWGVGSLACGFAQDVDQLMIFRVILGFGMG 131

Query: 133 GALPVSTTITAEFSPARIRTFAVTATIVCVPLGGMLAGLFANLVLPHYGWRGLFLLGGML 192
              P+  ++ +E  PA+ R   V       PLG + AG+ A L LP  GWRG+F +   +
Sbjct: 132 MEFPIGLSMVSEIVPAKSRGKYVAILEGFWPLGFIAAGILAYLTLPLIGWRGIF-IALSV 190

Query: 193 PVAFSLLLWFCIPESPRYLARQPDRWDELRSLLTRMSRTI---SAGMRFADAREQ----- 244
           P AF  ++   +PESPR+L  +  R +E   +++ M +++   + G+   +  +Q     
Sbjct: 191 PAAFVFVIRRYVPESPRWL-EEVGRNEEAEKVISTMEKSVIRANGGLALPEPAKQAAPSL 249

Query: 245 -NSQPKAGFGALFAEGRARDTIAIWLAFFMNLLAVYSAFSWLPTMLAGEGLSPSVAANGL 303
                +A F  L+    A+ TI +W  +F  LL  Y   +WL  +L   G   + +    
Sbjct: 250 LKGDKRALFAELWHGVYAKRTIMLWALWFFALLGYYGLTTWLGALLQQAGYEVTKSVTYT 309

Query: 304 TAYNIGGVFGALLCAVVIGRFGSRVPMLLCCLAAAGTAFAL-RSLDVSSQTTLLVAGIGL 362
              ++ G+ G +  A ++ ++G +   +L  + +AG A+   ++    +    L+A    
Sbjct: 310 IYISLAGIPGFIFSAWLLEKWGRKPTCVLMLVGSAGAAYVYGQTASAQAPVEQLIASGLC 369

Query: 363 HGLFVNAVQCTMYALCAYIYPTQVRATGTAGALAFGRLGAILSAFAGAIVITQGGASGYL 422
              F+  +   +YA    +YPT+ RATG   A + GRLG++L   A  +++   G +G  
Sbjct: 370 MQFFMFGMWSVLYAYTPELYPTRSRATGAGFASSVGRLGSLLGPLAVGLILPFTGHTGVF 429

Query: 423 AMLGGAMLFVFVTLLMVS 440
            +  GA+ F+    ++++
Sbjct: 430 TL--GAVSFMIAAFVVIA 445


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.141    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 859,700
Number of extensions: 36694
Number of successful extensions: 230
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 3
Length of query: 459
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 374
Effective length of database: 720,272
Effective search space: 269381728
Effective search space used: 269381728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)