BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4316.p
         (308 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093624|ref|YP_001098699.1| 2-dehydropantoate 2-reductase [...   118   4e-28

>gi|134093624|ref|YP_001098699.1| 2-dehydropantoate 2-reductase
           [Herminiimonas arsenicoxydans]
          Length = 336

 Score =  118 bits (295), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 155/322 (48%), Gaps = 27/322 (8%)

Query: 1   MNIAIVGAGAMGGLFGARLALNGQKVSFIEVAPATIAAISDNGLAFSDDSGTHTVRVPVG 60
           M IA++GAGA+GG  G +LAL G+ V+FI V  A + AI  NG       G+  V   V 
Sbjct: 1   MKIAVIGAGAIGGYVGVKLALAGEDVTFI-VRGANLEAIRKNGAKLIMHDGSEHVASNVK 59

Query: 61  RADSFAEP--FDLIVFFTKSLHTQSAVRSISHLVGQDTWALSVQNG------------LG 106
             +++ E    D+IV   K+   ++    +  L+G +T  +++QNG            L 
Sbjct: 60  ATNNYDEAGHQDIIVLAMKAHQLEAIADDLPKLIGPETVIVTMQNGIPFWYFHKHGGKLA 119

Query: 107 NAEI--------ISEVIPSERIIVGMTNLPADLKSAGVV-HSHGEGYVRIWTMSGKERPE 157
              +        I+  IP++R++  +    ++L + GV+ H  G+ +  I  + G     
Sbjct: 120 GTRVESVDPTGKITAKIPADRVLGCVVYPASELIAPGVIKHIEGDRF-PIGELDGSISER 178

Query: 158 VSRVAEIFSAAGLNCSADPQVRAAIWEKVAFNAALNSVCAVIGCTVGTAGSTEQGRALAM 217
            +RV+E F+ AG        +R+ +W K+  N   N + A+   T+         R LA 
Sbjct: 179 ATRVSECFTNAGFKSPVLENIRSEMWLKLWGNLTFNPISALSHSTLQDICQFPLSRELAA 238

Query: 218 RIAAETVSVAQALQIPARIAKVEEALLDAFRMHVNHKPSMLQDIEAGRQTEIDFINGAVA 277
            +  E  +VA  L I  R+  +++ +  A ++   HK SMLQD+EAGR  EID + G+V 
Sbjct: 239 AMMTEAQTVANKLGIEFRVT-LDKRIAGAEKVG-KHKTSMLQDVEAGRDPEIDALVGSVV 296

Query: 278 EQARGCGVSVPTVTALYELVKM 299
           E  R      P +  +Y LVK+
Sbjct: 297 ELGRLTETPTPHIDTVYALVKL 318


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 564,026
Number of extensions: 22539
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 227
Effective length of database: 733,452
Effective search space: 166493604
Effective search space used: 166493604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)