BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4312.p (288 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095639|ref|YP_001100714.1| high-affinity branched-chain am... 98 4e-22 gi|134093665|ref|YP_001098740.1| branched chain amino acid ABC t... 86 2e-18 gi|134096410|ref|YP_001101485.1| high-affinity branched-chain am... 79 2e-16 gi|134095849|ref|YP_001100924.1| high-affinity branched-chain am... 69 2e-13 >gi|134095639|ref|YP_001100714.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 309 Score = 98.2 bits (243), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 88/308 (28%), Positives = 156/308 (50%), Gaps = 28/308 (9%) Query: 1 MIVWIETFINGITLGALYGLFGLGLSLSLGVMRMINIAHGDLIVLGAYLASIVMAALHC- 59 M ++I+ ING+ LG++Y L LG ++ GV+ +IN AHGD++++GA ++ L+ Sbjct: 1 MDIFIQQIINGLVLGSMYALVALGYTMVYGVLNLINFAHGDVLMIGAMAGLTILKMLNTV 60 Query: 60 GP--------FTSLLIVLPVMFCIGWLLQRCLLNFVVGLDPLAPLLLTFGLSIVLQNLLQ 111 P ++L +PV + L++R + LAPL+ G+SI+LQ Sbjct: 61 APDLPGIVKLIIAILGAIPVCVAVNVLIERVAYRRLRNAPRLAPLITAIGVSILLQTFAM 120 Query: 112 EIFTADTRSLPSGDISLAGLQLGGVSLGLLPVLTTVISVLVFAAVSLLLSRTSVGRQARA 171 I+ P + L + G + V+ +++ ++LL+ +T +GR RA Sbjct: 121 MIWGRSPLPFPQ-VMPGEPLHILGALISPTQVMLLILAAASMLLLALLIEKTKLGRAMRA 179 Query: 172 VADDLSTARLVGIDGHRFFALVTGFIMVAV--SLASVLYGIR---APFSPTSGPERLLYS 226 A++ A L+G+D +R +V F++ A ++A V++ A F+ P L + Sbjct: 180 TAENPRVAGLMGVDSNR--VIVMTFVIGATLAAIAGVMWAANYSSAQFAMGFVPG--LKA 235 Query: 227 FEAVVLGGLGNVWGTLLGGMAIGIAQLMGAKVNASL-GPF--------FGHLVFLVALIV 277 F A VLGG+GN++G +LGG+ +G+ + +GA L G F F +V ++ L + Sbjct: 236 FSAAVLGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGGFLGSHYQDIFAFVVLIIVLTL 295 Query: 278 RPQGLFSR 285 RP G+ Sbjct: 296 RPSGIMGE 303 >gi|134093665|ref|YP_001098740.1| branched chain amino acid ABC transporter permease [Herminiimonas arsenicoxydans] Length = 293 Score = 85.9 bits (211), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 77/272 (28%), Positives = 135/272 (49%), Gaps = 9/272 (3%) Query: 24 GLSLSLGVMRMINIAHGDLIVLGAYLASIVMA-------ALHCGPFTSLLIVLPVMFCIG 76 GL L GV R+IN+A G + LGAY V + +H PF LL V+ IG Sbjct: 24 GLQLIFGVQRIINLACGSIYALGAYFGIFVTSWALSKGLPVHLFPFV-LLGAGIVIGLIG 82 Query: 77 WLLQRCLLNFVVGLDPLAPLLLTFGLSIVLQNLLQEIFTADTRSLPSGDISLAGLQLGGV 136 L+R L+ + LLLTF + ++ Q++L+ + AD + LP+ ++ L GV Sbjct: 83 IPLER-LIRTIYNRPESFQLLLTFAVMLMFQDVLRFFWGADPQQLPNVSMTFGILSAFGV 141 Query: 137 SLGLLPVLTTVISVLVFAAVSLLLSRTSVGRQARAVADDLSTARLVGIDGHRFFALVTGF 196 S+ V+ ++V + ++ L +T G+ RA A++ T+ +GI+ R + +V Sbjct: 142 SMPTYNVMVIAVAVSLAIGMAYFLGKTKTGKILRATAENRETSAAMGINVTRVYVMVFTL 201 Query: 197 IMVAVSLASVLYGIRAPFSPTSGPERLLYSFEAVVLGGLGNVWGTLLGGMAIGIAQLMGA 256 + ++ L A S G E ++ +F VV+GGLG++ G +G + +G+ + + A Sbjct: 202 GTMLGTIGGALVIPNAAASLEMGVELVVEAFAVVVIGGLGSMKGAAVGALIVGLIRALSA 261 Query: 257 KVNASLGPFFGHLVFLVALIVRPQGLFSRAKS 288 + + L LI +P GL+ +A++ Sbjct: 262 MYYPEAEILAIYAIVLAVLIWKPAGLYGKAET 293 >gi|134096410|ref|YP_001101485.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 294 Score = 79.3 bits (194), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 84/296 (28%), Positives = 142/296 (47%), Gaps = 30/296 (10%) Query: 17 LYGLFGLGLSLSLGVMRMINIAHGDLIVLGAY---LASIVMAALHCG-PFTSLLIVLPVM 72 +Y + +G +L GV+ +I +HGD +++GA+ AS + L G P+ LL V+ Sbjct: 2 IYAMVAVGFTLFFGVLDVIKFSHGDTLMVGAFAGLTASTGVLMLDIGSPWIRLLAVVLAA 61 Query: 73 FCIGWLLQRCLLNFVV----GLDPLAPLLLTFGLSIVLQNLLQEIFTADTRSLPSGDI-S 127 C+ LL + ++V PL LL T L V++ ++ + + S P + Sbjct: 62 VCVTGLLGAAIAKWLVLPLHKAPPLNTLLATLMLGTVMREAVRLFYPDGSNSQPFPSLLP 121 Query: 128 LAGLQLGGVSLGLLPVLTTVISVLVFAAVSLLLSRTSVGRQARAVADDLSTARLVGIDGH 187 ++ GG +L V+ + + + A V L++RT +G RAVA D TARL+GI+ Sbjct: 122 TDAIEFGGFALRADNVILLLSGLAIIAGVHFLITRTRLGMAIRAVAQDGETARLMGINFE 181 Query: 188 RF----FALVTGFIMVAVSLASVLYGIRAPFSPTSGPERLL---YSFEAVVLGGLGNVWG 240 FAL +G +LA V+ G+ ++ + LL F A +LGGLGN++G Sbjct: 182 AVVLLTFALGSGM----AALAGVMNGLY--YNEINFNVGLLLGVIGFAAAILGGLGNIYG 235 Query: 241 TLLGGMAIGIAQLMGAKVNASLGP--------FFGHLVFLVALIVRPQGLFSRAKS 288 ++GG Q++G+ +L P F V ++ + +P GL + S Sbjct: 236 AIIGGFLFAGLQVLGSATLPALIPNIPSAYKDVFAFAVVIILMAWKPTGLIAEKSS 291 >gi|134095849|ref|YP_001100924.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 291 Score = 69.3 bits (168), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/295 (24%), Positives = 144/295 (48%), Gaps = 16/295 (5%) Query: 1 MIVWIETFINGITLGALYGLFGLGLSLSLGVMRMINIAHGDLIVLGAYLASIVMAALHCG 60 M +++ ++G+++GA+Y L LG + R +N AHGD++++GA LA +V Sbjct: 1 MSTFLQYVLSGLSIGAIYSLVALGFYIMWSACRSVNFAHGDVMMVGAVLA-VVSNDFGLS 59 Query: 61 PFTSLLIVLPVMFCI--GWLLQRCLLN-FVVGLDPLAPLLLTFGLSIVLQNLLQEIFTAD 117 P+ I L ++ C+ G L++R + + + + +L T + I++++ + F + Sbjct: 60 PYIG--IPLSIVACVLYGVLVERFAVRPYTKEANAIGWMLTTIAIGIMVESFVTIKFGSF 117 Query: 118 TRSLPSGDISLAGLQLGGVSLGLLPVLTTVISVLVFAAVSLLLSRTSVGRQARAVADDLS 177 R+LPS + + + G + L +L + +L + + RT +GR RAVA + Sbjct: 118 ARALPSPGVD-KPITIFGAGIYLQEMLIPLFVILFMIGLEVFYRRTMLGRAMRAVAFNRI 176 Query: 178 TARLVGIDGHRFFALVTGFIMVAVS----LASVLYGIRAPFSPTSGPERLLYSFEAVVLG 233 A ++GI+ +VT F + +A +L G S T G L F ++ Sbjct: 177 AAGMMGIN----VGMVTSFSFALAAGLGGIAGILIGPIIQVSSTMGVLIGLKGFAVAIMA 232 Query: 234 GLGNVWGTLLGGMAIGI-AQLMGAKVNASLGPFFGHLVFLVALIVRPQGLFSRAK 287 + + G ++ G+ G+ + + ++++ G + ++ L++ PQGLF R + Sbjct: 233 SITSARGVVITGLLYGVLEKFVEGYISSAAREVVGFSIMILVLLMFPQGLFGRKE 287 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.329 0.145 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 443,710 Number of extensions: 16026 Number of successful extensions: 96 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 88 Number of HSP's successfully gapped: 4 Length of query: 288 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 207 Effective length of database: 733,452 Effective search space: 151824564 Effective search space used: 151824564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 128 (53.9 bits)