BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4311.p (236 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095636|ref|YP_001100711.1| high-affinity branched-chain am... 169 1e-43 gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 162 2e-41 gi|134095847|ref|YP_001100922.1| high-affinity branched-chain am... 156 8e-40 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 117 6e-28 gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 101 4e-23 >gi|134095636|ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 169 bits (428), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 96/235 (40%), Positives = 149/235 (63%), Gaps = 6/235 (2%) Query: 1 MLRVNGLSAYYGLFQALFGIDLYVRPGETVALIGANGAGKSSLLRAVVGSIRCGRSQIHL 60 +L++ GL YG QA+ GIDL VR GE + LIGANGAGK++ L+A+ G++ R H+ Sbjct: 5 VLKIAGLKVAYGGIQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTLPECRVDGHI 64 Query: 61 D--GKAIGGESECAQLARGIALVPEGRKLFPSLSVLENLQVAA--RNGRAGVWT-VERVL 115 + G+AI G + + +A+VPEGR +F +S+ ENL + A RN + G+ +E+ Sbjct: 65 EYAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRNDKQGIADDMEKWF 124 Query: 116 RELPVLDQLKHRPATSLSGGQQQLVALSRALVTNPAYLLFDEVSLGLSPLAVNDVYALIR 175 P L + + A +LSGG+QQ++A++RAL+++P LL DE S+GLSP+ V ++ +IR Sbjct: 125 AVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPQLLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 176 QIKNEGISILLVEQNLHRALAESDRYYCIQKGRISLAGISSEADQD-QVTHAYFG 229 + +GI+ILLVEQN AL + R Y ++ G I++ G + + D +V AY G Sbjct: 185 SVAAQGITILLVEQNARLALQAAHRAYVMESGLITMQGDAQQMLNDPKVREAYLG 239 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 162 bits (409), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 93/232 (40%), Positives = 137/232 (59%), Gaps = 4/232 (1%) Query: 2 LRVNGLSAYYGLFQALFGIDLYVRPGETVALIGANGAGKSSLLRAVVGSIRCGRSQIHLD 61 L V GL+ Y L + + V PG+ ++GANGAGKS+L+R+++G + +I + Sbjct: 4 LSVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWN 63 Query: 62 GKAIGGESECAQLARGIALVPEGRKLFPSLSVLENLQVAARNGRAGVWTVERVLRELPVL 121 G+ + GE A +A GI+ +PEGRK+FP +SV ENL + A ER+ R + Sbjct: 64 GRNLAGEKTHAIIASGISCIPEGRKVFPRMSVAENLALGAFLVTNSAVVRERLARVYEIF 123 Query: 122 DQLKHRPAT---SLSGGQQQLVALSRALVTNPAYLLFDEVSLGLSPLAVNDVYALIRQIK 178 +LK R A ++SGG+Q +V++ R L+ P L+ DE SLGLSPL V + + +IR+I Sbjct: 124 PRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKENFNVIRRIN 183 Query: 179 NEGISILLVEQNLHRALAESDRYYCIQKGRISLAGISSE-ADQDQVTHAYFG 229 GI++LLVEQN + LA S Y + +GR+ G + E A D V AYFG Sbjct: 184 ALGITVLLVEQNARQTLAISHYGYVLSQGRVMAEGTAEELASNDDVRAAYFG 235 >gi|134095847|ref|YP_001100922.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 243 Score = 156 bits (395), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 93/236 (39%), Positives = 146/236 (61%), Gaps = 7/236 (2%) Query: 1 MLRVNGLSAYYGLFQALFGIDLYVRPGETVALIGANGAGKSSLLRAVVGSIRCGRSQIHL 60 +L+V L YG +A GI + V GE V +IG+NGAGKSS L+A+ G ++ I L Sbjct: 5 LLKVENLCVNYGHIEAARGISIEVGEGEFVGMIGSNGAGKSSALKAIAGVVKPASGSITL 64 Query: 61 DGKAIGGESECAQLARGIALVPEGRKLFPSLSVLENLQV-----AARNGRAGVWT-VERV 114 GK + G + + +G+ALVPEGR +F SV +NL + A R+G A + ++R+ Sbjct: 65 GGKPVQGLASHEMVHQGVALVPEGRFVFADQSVEDNLILGGFVQAQRSGVAALRDDIDRM 124 Query: 115 LRELPVLDQLKHRPATSLSGGQQQLVALSRALVTNPAYLLFDEVSLGLSPLAVNDVYALI 174 + P L + + + A SLSGG+QQ++ ++R L+++P LL DEVSLGL+P ++ ++ ++ Sbjct: 125 FQLFPRLKERRTQQAGSLSGGEQQMLVIARGLMSHPRLLLIDEVSLGLAPKILDFLFPVL 184 Query: 175 RQIKNEGISILLVEQNLHRALAESDRYYCIQKGRISLAGISSEADQD-QVTHAYFG 229 + +G+SILLVEQ RALA + R Y ++ G + ++G SS+ +D V AY G Sbjct: 185 VDLNRQGLSILLVEQIATRALAVTSRAYVMENGNVKISGRSSDLVKDAAVMEAYLG 240 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 117 bits (292), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 128/239 (53%), Gaps = 13/239 (5%) Query: 2 LRVNGLSAYYGLFQALFGIDLYVRPGETVALIGANGAGKSSLLRAVVGSIRCGRSQIHLD 61 L V+GL YG Q + + L V GE + L+G NGAGK++ +VG + +I LD Sbjct: 5 LIVSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELD 64 Query: 62 GKAIGGESECAQLARGIALVPEGRKLFPSLSVLEN----LQVAARNGRAGVWTVERVLRE 117 G I + + G++ +P+ +F LSV +N L++ NG+A + E++ + Sbjct: 65 GVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKA--LSKEQIEQR 122 Query: 118 LPVL------DQLKHRPATSLSGGQQQLVALSRALVTNPAYLLFDEVSLGLSPLAVNDVY 171 L L ++L+ A SLSGG+++ V ++RAL TNP ++L DE G+ P+AV ++ Sbjct: 123 LDTLLADLQIEKLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQ 182 Query: 172 ALIRQIKNEGISILLVEQNLHRALAESDRYYCIQKGRISLAGISSEADQDQ-VTHAYFG 229 ++R +K GI +L+ + N+ L DR Y I +G + +G + D+ V Y G Sbjct: 183 RIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIADESVRRVYLG 241 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 101 bits (251), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 123/240 (51%), Gaps = 15/240 (6%) Query: 1 MLRVNGLSAYYGLFQALFGIDLYVRPGETVALIGANGAGKSSLLRAVVGSIRCGRSQIHL 60 M+ + +S +YG FQ L V G+ V + G +G+GKS+L++ V G + I + Sbjct: 1 MIEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITV 60 Query: 61 DGKAIGG-ESECAQLARGIALVPEGRKLFPSLSVLENLQVAARN--GRAGVWTVERVLRE 117 DG ++G ++ L I +V + +LFP LS+ ENL + GR+ ER L+ Sbjct: 61 DGISVGDPKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSEEEAAERGLKY 120 Query: 118 LPVLDQL--KHRPATSLSGGQQQLVALSRALVTNPAYLLFDEVSLGLSPLAVNDVYALIR 175 L + + K + LSGGQQQ VA++RAL +P +LFDE + L P +N+V ++ Sbjct: 121 LDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 176 QIKNEGISILLVEQNLHRALAESDRYYCIQKGRISLAGISSEADQDQVTHAYFG-VTDDR 234 + +G+++++V + A ++R + +G I +D +FG V DR Sbjct: 181 GLAQDGMTMMVVTHEMGFARKVANRVIFMDQGTIV---------EDCTKDEFFGTVRSDR 231 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.137 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 447,485 Number of extensions: 18038 Number of successful extensions: 216 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 163 Number of HSP's successfully gapped: 43 Length of query: 236 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 157 Effective length of database: 740,042 Effective search space: 116186594 Effective search space used: 116186594 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)