BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4310.p (249 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 135 2e-33 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 119 2e-28 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 111 3e-26 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 106 1e-24 gi|134093663|ref|YP_001098738.1| putative branched-chain amino a... 105 3e-24 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 135 bits (340), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 87/249 (34%), Positives = 132/249 (53%), Gaps = 14/249 (5%) Query: 1 MLLQLSDVRKSYRDNVVLHGATLSLAEGELVGMIGPNGAGKSTLFGTISGEHRCDAGKVL 60 ++L +++V K + L + + +G++ G+IGPNGAGK+T F I+G ++ D+G Sbjct: 9 IILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSFE 68 Query: 61 LDGADITSFSAEQRCWAGIGRTFQIPRPFLGITVYENALVA-------ATFGAGLHGRAA 113 L G + + AGI RTFQ R F +T EN +V FGA H +AA Sbjct: 69 LAGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHHKAA 128 Query: 114 ATQ-------AVDAINQCGLAAWANRPAAQLTLLQRKRLELARAIATRPRLLLLDEIAGG 166 + A++ ++ G+A +A R A L+ ++RLE+ARA+AT P+LL LDE A G Sbjct: 129 RQEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAAG 188 Query: 167 LTDGEVAELLLLVQSINRTGTAVLWIEHLVHALVAVVSRLVVLSEGRILDEGDPQTVLNS 226 + E L L+ I G +L IEH V ++ + R+ VL G+ + EG P V + Sbjct: 189 MNATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIAEGVPADVQKN 248 Query: 227 RLVRETYLG 235 V E YLG Sbjct: 249 PAVIEAYLG 257 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 119 bits (298), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 124/248 (50%), Gaps = 14/248 (5%) Query: 3 LQLSDVRKSYRDNVVLHGATLSLAEGELVGMIGPNGAGKSTLFGTISGEHRCDAGKVLLD 62 LQ D+ ++ + + L G + +IGPNGAGKST +SG +R +G + Sbjct: 348 LQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFINCVSGFYRPTSGSIEFM 407 Query: 63 GADITSFSAEQRCWAGIGRTFQIPRPFLGITVYENALVAAT--FGAGLHG---------- 110 G T+ + Q G+ RTFQ F +T EN LV A + +GL Sbjct: 408 GQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVLVGADSRYRSGLFATLLRLPSYFH 467 Query: 111 --RAAATQAVDAINQCGLAAWANRPAAQLTLLQRKRLELARAIATRPRLLLLDEIAGGLT 168 R A +A + GL +A A L ++RLE+ARA+A P+LLLLDE A GLT Sbjct: 468 DERRYAAEARCLLEYVGLDDYAEEKARNLPFGHQRRLEIARALAMSPKLLLLDEPAAGLT 527 Query: 169 DGEVAELLLLVQSINRTGTAVLWIEHLVHALVAVVSRLVVLSEGRILDEGDPQTVLNSRL 228 GE+ +L+ L++++ VL +EH V ++AV + VL G+++ G V ++ Sbjct: 528 HGEIEDLMKLIRNLASHQITVLLVEHHVDMIMAVSDHVTVLDYGKVIASGTVAEVRSNPA 587 Query: 229 VRETYLGS 236 V E Y G+ Sbjct: 588 VIEAYFGT 595 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 111 bits (278), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 123/238 (51%), Gaps = 6/238 (2%) Query: 3 LQLSDVRKSYRDNVVLHGATLSLAEGELVGMIGPNGAGKSTLFGTISGEHRCDAGKVLLD 62 L +S ++KSY V+ L + GE++G++GPNGAGK+T F I G DAG++ LD Sbjct: 5 LIVSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELD 64 Query: 63 GADITSFSAEQRCWAGIGRTFQIPRPFLGITVYENALVAATFGAGLHGRAAATQAVDA-- 120 G DI+ +R G+ Q F ++V +N + A ++G+A + + ++ Sbjct: 65 GVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDN-IRAVLELQRVNGKALSKEQIEQRL 123 Query: 121 ---INQCGLAAWANRPAAQLTLLQRKRLELARAIATRPRLLLLDEIAGGLTDGEVAELLL 177 + + A L+ +R+R+E+ARA+AT PR +LLDE G+ V E+ Sbjct: 124 DTLLADLQIEKLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQR 183 Query: 178 LVQSINRTGTAVLWIEHLVHALVAVVSRLVVLSEGRILDEGDPQTVLNSRLVRETYLG 235 +V+ + G VL +H V + + R ++++G +L G P ++ VR YLG Sbjct: 184 IVRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIADESVRRVYLG 241 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 106 bits (264), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 128/241 (53%), Gaps = 13/241 (5%) Query: 2 LLQLSDVRKSYRDNVVLHGATLSLAEGELVGMIGPNGAGKSTLFGTISGEHRCDAGKVLL 61 LL++ ++ + + DN V+ +LS+ GE ++GP+G GK+TL I+G DAGK+LL Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILL 62 Query: 62 DGADITSFSAEQRCWAGIGRTFQIPRPFLGITVYENALVAATFGAGLHGRAAATQAVD-A 120 DG D+T EQR + + + + F +TV N +A ++ Q VD A Sbjct: 63 DGVDLTGVPPEQRVVRTVFQNYAL---FPHMTVAGN--IAFPLEMANTPKSEIKQKVDEA 117 Query: 121 INQCGLAAWANRPAAQLTLLQRKRLELARAIATRPRLLLLDEIAGGLTDGEVAELLL--L 178 + L +A R +L+ QR+R+ +ARA+ TRP+LLLLDE L D ++ E + L Sbjct: 118 LEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSAL-DAQLREQMQIEL 176 Query: 179 VQSINRTGTAVLWIEHLVHALVAVVSRLVVLSEGRILDEGDPQTVLN---SRLVRETYLG 235 + G +++ H +A+ R+ V+++G I +P + + SR V + ++G Sbjct: 177 INLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVAD-FIG 235 Query: 236 S 236 + Sbjct: 236 T 236 >gi|134093663|ref|YP_001098738.1| putative branched-chain amino acid ABC transporter, ATP-binding protein [Herminiimonas arsenicoxydans] Length = 255 Score = 105 bits (261), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 113/224 (50%), Gaps = 11/224 (4%) Query: 1 MLLQLSDVRKSYRDNVVLHGATLSLAEGELVGMIGPNGAGKSTLFGTISGEHRCDAGKVL 60 +LLQ + + Y D + LH LS++ GE V ++GPNGAGK+TL ++G H+ G V Sbjct: 6 VLLQAQQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTTGNVH 65 Query: 61 LDGADITSFSAEQRCWAGIGRTFQIPRPFLGITVYENALVAAT---------FGAGLHGR 111 +G++I A G+ R FQ+ F +TV E V+A FG+ R Sbjct: 66 FNGSNIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSACSYLNMRWNGFGSLFGSR 125 Query: 112 AAATQAVDAINQCGLAAWANRPAAQLTLLQRKRLELARAIATRPRLLLLDEIAGGLTDGE 171 V + GLA W + + L +RK L++A A A P+++LLDE G++ + Sbjct: 126 KVNDIVVRTADAFGLAPWLDTKGSSLPHGRRKLLDVASAFALHPKVMLLDEPTAGVSTAD 185 Query: 172 VAELL-LLVQSINRTGT-AVLWIEHLVHALVAVVSRLVVLSEGR 213 ++ L+++ G A++ +EH + + +R++ + G+ Sbjct: 186 KHGVMETLLRAAKHMGIEAIMLVEHDMDLVSRYSTRIIAMQAGK 229 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 448,336 Number of extensions: 17137 Number of successful extensions: 182 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 144 Number of HSP's successfully gapped: 44 Length of query: 249 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 170 Effective length of database: 740,042 Effective search space: 125807140 Effective search space used: 125807140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)