BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4308.p
         (332 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096247|ref|YP_001101322.1| hypothetical protein HEAR3092 [...    84   8e-18

>gi|134096247|ref|YP_001101322.1| hypothetical protein HEAR3092
           [Herminiimonas arsenicoxydans]
          Length = 807

 Score = 84.3 bits (207), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 124/265 (46%), Gaps = 4/265 (1%)

Query: 64  GINISLIHASPHS-AIRTADMVTRGGSESLIFNFLLSGREGEAEQDGRRVSFREGAGAFC 122
           G   S ++ASP + + R   M+TR  + S+I   L  G  G+ +      +   G     
Sbjct: 55  GSVFSTLNASPQAFSARDPAMLTR--TNSVIVFVLFEGV-GQIDVGAETAAVSAGDIYLL 111

Query: 123 NAARPYKLNFRETFRLMVLQLPYAALSDGVRGLDGLVAQDYSAGSEVFPLVLTYLSQLSK 182
           +++R +KL     FR  V++L  A     +           S+ S V  + L +++ ++ 
Sbjct: 112 DSSRQWKLALTSAFRASVIRLEKANFISRLMHTGKTDICKISSASGVGNIALEFVNAITC 171

Query: 183 RTHQLDSVMAYRIRQNLVDLIAAMLTEASQRMPLQPSECKTAAMIRVKTFIEKNINDPEL 242
           +   L S    ++   L  ++ A L    +      +  + + + R+   IE  + DPEL
Sbjct: 172 QLASLGSGDLEQMEDALSTMLVASLAHKEEEDVSHSTSMQLSHLRRICRTIEARLTDPEL 231

Query: 243 SPSVVSSALRLSSRYINQLLEKEGTSLSRLIWRRRLQLIAEDLVDPRLAALSISSIALAR 302
           S   ++ + +LS+RY+ +L    GT+    + +RRL     DL +  L  L+IS +    
Sbjct: 232 SAIDIARSEQLSARYLQKLFASAGTTFGEYVKKRRLDRCRIDLSNLSLKHLTISELCFRW 291

Query: 303 GFNDLAHFSKAFRLLYEKTPREYRS 327
           GFND A+FS+AF L +  +P+ YRS
Sbjct: 292 GFNDAANFSRAFHLEFGISPKGYRS 316


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 506,309
Number of extensions: 17216
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 250
Effective length of database: 730,157
Effective search space: 182539250
Effective search space used: 182539250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)