BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4290.p
         (787 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095191|ref|YP_001100266.1| hypothetical protein HEAR1999 [...    66   7e-12

>gi|134095191|ref|YP_001100266.1| hypothetical protein HEAR1999
           [Herminiimonas arsenicoxydans]
          Length = 594

 Score = 65.9 bits (159), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 24/180 (13%)

Query: 433 MVEEPEAHLHVQVQRNFSLNAHGLLCSKDELHRGLRSQLVISTHSSHLAHGDSFTRLRYV 492
           +VEEPEAHLH  VQR       G     ++    L +  +++THS H+A   S T +R +
Sbjct: 295 VVEEPEAHLHPHVQRLVYRYFLGTRAEDEDEAPPLTT--ILTTHSPHIA---SVTPIRSI 349

Query: 493 KRIPGDGA-GKKPSTDVVNLGDAFGDDDETRTFAERYFQVQHTDLLFADAAIFVEGTAER 551
             +  +   GK  +    N      D+D+     +RY  V   ++LF+   I VEG AER
Sbjct: 350 VLLRHNATDGKTVAVSTANTPFTQRDEDDL----QRYIDVTRGEILFSRGVILVEGDAER 405

Query: 552 MLVPMF---IKQNFEALAKKYISFLDIGGSHAHRLRPLVERLG-----IPTTVITDLDPV 603
            ++P F   +   F+ L    I+   +GG++     P V+ LG     IP  ++TD DPV
Sbjct: 406 FIIPAFADALGIPFDILG---ITVCSVGGTN---FTPYVKLLGPKGLNIPHVILTDRDPV 459


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,495,881
Number of extensions: 63964
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 1
Length of query: 787
Length of database: 1,000,347
Length adjustment: 89
Effective length of query: 698
Effective length of database: 707,092
Effective search space: 493550216
Effective search space used: 493550216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)