BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4278.p
         (162 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096351|ref|YP_001101426.1| high-affinity branched-chain am...   225   1e-60
gi|134093985|ref|YP_001099060.1| putative transcriptional regula...   118   1e-28
gi|134093411|ref|YP_001098486.1| leucine-responsive regulatory p...    75   1e-15

>gi|134096351|ref|YP_001101426.1| high-affinity branched-chain amino
           acid transport system; global regulatory protein, Leu
           responsive; site-specific blocking of 549 methylation
           [Herminiimonas arsenicoxydans]
          Length = 157

 Score =  225 bits (573), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/151 (72%), Positives = 125/151 (82%)

Query: 4   SIALDDLDRRILQALQTDASQTNQELAAQVHASPPTCLRRVKRLVEAGVIARQVALLDAA 63
           +I LD+LDRRIL ALQ D+SQTN +LA  VHASPPTCLRRVKRLV+AGVI RQVA++   
Sbjct: 5   TILLDELDRRILNALQGDSSQTNNDLALAVHASPPTCLRRVKRLVDAGVIERQVAIVSPQ 64

Query: 64  QLASTLTAIVEITLDRQGEEEQQHFEALVAGEAAVQQCYRVSPGPDFVLVVLVRDMPAYH 123
           ++ + LTAIVEITLD Q  E Q  FE +VAGE+AV QCYRVSPGPDFVLV+ V DMPAY+
Sbjct: 65  KIGAGLTAIVEITLDNQAAERQVEFETVVAGESAVLQCYRVSPGPDFVLVIQVADMPAYN 124

Query: 124 ALAHRLFASQRNVRNVRSYFSIHRSKFETAI 154
           AL HRLFAS  NVRNV+S+FSIHRSKFET I
Sbjct: 125 ALVHRLFASHANVRNVKSFFSIHRSKFETRI 155


>gi|134093985|ref|YP_001099060.1| putative transcriptional regulator
           [Herminiimonas arsenicoxydans]
          Length = 169

 Score =  118 bits (295), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 89/152 (58%)

Query: 6   ALDDLDRRILQALQTDASQTNQELAAQVHASPPTCLRRVKRLVEAGVIARQVALLDAAQL 65
            LD +DR++L  LQ D     + LA +VH S PTCLRR++ + +AG+I+  VA++D   L
Sbjct: 6   TLDKVDRKLLNLLQKDNQIPTRILADKVHISQPTCLRRIRDMRDAGIISADVAMIDPFAL 65

Query: 66  ASTLTAIVEITLDRQGEEEQQHFEALVAGEAAVQQCYRVSPGPDFVLVVLVRDMPAYHAL 125
              + A +E++L  Q +E    FE  +  E  V QCY VS   D+ LVV V DM AY+  
Sbjct: 66  GYGMLAFLEVSLANQSDEHMLEFETRMNREPEVMQCYFVSGDYDYFLVVHVVDMDAYYQF 125

Query: 126 AHRLFASQRNVRNVRSYFSIHRSKFETAILLD 157
             R  +   NVR+ +S F + R+KF+T I LD
Sbjct: 126 VRRAISGSGNVRHFQSRFPMKRAKFDTRIALD 157


>gi|134093411|ref|YP_001098486.1| leucine-responsive regulatory
           protein [Herminiimonas arsenicoxydans]
          Length = 155

 Score = 75.5 bits (184), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 73/143 (51%)

Query: 7   LDDLDRRILQALQTDASQTNQELAAQVHASPPTCLRRVKRLVEAGVIARQVALLDAAQLA 66
            D  DR +L+ LQ+    +N EL+ +V+ SPP C RRV+RL + GVI    AL+DAA L 
Sbjct: 4   FDRYDRILLETLQSKGRVSNVELSERVNLSPPQCYRRVQRLEQEGVIRGYAALVDAAALG 63

Query: 67  STLTAIVEITLDRQGEEEQQHFEALVAGEAAVQQCYRVSPGPDFVLVVLVRDMPAYHALA 126
             +TA V + + R+  ++ +  E  +     + +CY +S   D++L V+  D+ +  +  
Sbjct: 64  LGVTAFVNLNIAREQFKQVRELEQAIRQFPEILECYTISGDFDYLLKVVATDLKSLSSFL 123

Query: 127 HRLFASQRNVRNVRSYFSIHRSK 149
                    V  VRS   +   K
Sbjct: 124 TDRLMQVPGVAGVRSMVCLEEIK 146


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 269,768
Number of extensions: 9498
Number of successful extensions: 23
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 3
Length of query: 162
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 87
Effective length of database: 753,222
Effective search space: 65530314
Effective search space used: 65530314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)