BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4277.p
         (467 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096349|ref|YP_001101424.1| bifunctional N-acetyl glucosami...   682   0.0  

>gi|134096349|ref|YP_001101424.1| bifunctional N-acetyl
           glucosamine-1-phosphate uridyltransferase
           (N-terminal)/glucosamine-1-phosphate acetyl transferase
           (C-terminal) [Herminiimonas arsenicoxydans]
          Length = 452

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/452 (72%), Positives = 382/452 (84%)

Query: 16  MNIVILAAGMGKRMQSSLPKVLHPLAGKPLLGHVIDTARELAPTQLCVIYGHGGDAVPKA 75
           MNIVILAAGMGKRMQS+LPKVLHPLAGKPLL HVIDTAR+L+P+ LC+IYGHGG+ VP+ 
Sbjct: 1   MNIVILAAGMGKRMQSALPKVLHPLAGKPLLSHVIDTARQLSPSTLCIIYGHGGEQVPQL 60

Query: 76  FAGQGLSFALQEPQLGTGHAVMQALPHLDDAAPTLVLYGDVPLTSASSLQRLLVAAGQDK 135
              + LSFA QEPQLGTGHAVMQA+P L+D +PTL+LYGDVPLT+A+SLQRLL  AG DK
Sbjct: 61  LQSKDLSFAKQEPQLGTGHAVMQAVPQLNDDSPTLILYGDVPLTTAASLQRLLDIAGADK 120

Query: 136 LGVLTVTLDNPTGYGRIVREDGRIKRIVEQKDASQAELAIGEVNTGIIVAPTARLRQWLA 195
           LG+LTV LDNPTGYGRIVRE+G I RIVEQKDA++ E +I EVNTGIIVAPT +L+ WLA
Sbjct: 121 LGILTVDLDNPTGYGRIVRENGAITRIVEQKDANEQERSIREVNTGIIVAPTKQLKTWLA 180

Query: 196 KLSNHNAQGEYYLTDVIAAAVADGVDVVSAQPDDVAETLGVNSKVQLAELERVHQRNIAH 255
            LSN NAQGEYYLTD++A+AVADGV VVSAQPD V ET GVNSKVQLAELERVHQ NIA 
Sbjct: 181 NLSNKNAQGEYYLTDIVASAVADGVQVVSAQPDHVWETHGVNSKVQLAELERVHQNNIAR 240

Query: 256 RLLEAGVTLADPARIDVRGSLECARDVSIDVNCVFEGQVSIGEGSTIGAHCVIRNARIAA 315
            LLE GVTLADPARIDVRG+L C RDVSIDV C+FEG V++ +G  I A+CV+ N  + A
Sbjct: 241 ALLEHGVTLADPARIDVRGTLTCGRDVSIDVGCIFEGDVTLADGVRIDAYCVLHNTTVGA 300

Query: 316 GVEIKPFTHIDDAVVGAGGKIGPYARLRPGTELAQDVHIGNFVEVKNSIVGVGSKANHLA 375
              I+P++H + A VG    IGPYARLRPG  L +DVHIGNFVEVKNS +   SKANHL 
Sbjct: 301 QTHIRPYSHFEGATVGTACIIGPYARLRPGAVLGEDVHIGNFVEVKNSDIAAHSKANHLT 360

Query: 376 YVGDADVGSGVNVGAGVITCNYDGANKFRTIIEDEVFIGSDSQLVAPVRVGKGATIGAGT 435
           Y+GD+ +GS VN+GAG ITCNYDG NK RTIIED+VF+GS +QL+AP+RVGKG+TIGAGT
Sbjct: 361 YIGDSTIGSRVNIGAGTITCNYDGVNKSRTIIEDDVFVGSATQLIAPIRVGKGSTIGAGT 420

Query: 436 TLTKDAPAGQLTLSRAKQLSLPGWQRPVKIKK 467
           TLTKDAPA +LT+SR++Q+++ GWQRPVKIKK
Sbjct: 421 TLTKDAPADKLTVSRSRQITVDGWQRPVKIKK 452


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 923,123
Number of extensions: 41731
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 382
Effective length of database: 720,272
Effective search space: 275143904
Effective search space used: 275143904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)