BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4275.p
         (358 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094365|ref|YP_001099440.1| putative CDP-glucose 4,6-dehydr...   256   2e-69
gi|134094383|ref|YP_001099458.1| dTDP-glucose 4,6 dehydratase [H...    68   5e-13

>gi|134094365|ref|YP_001099440.1| putative CDP-glucose
           4,6-dehydratase [Herminiimonas arsenicoxydans]
          Length = 307

 Score =  256 bits (653), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 135/299 (45%), Positives = 187/299 (62%), Gaps = 12/299 (4%)

Query: 63  DVRDPRHLAETLAAVQPDIVFHLAAQPLVRDSYATPVDTYATNVMGTVHLLEAVRHTPSV 122
           ++ D   L E + AVQPD VFHLAAQ LVR SY  P++T+ TNVMGT+H+LEA+R     
Sbjct: 7   NICDQAALEEAILAVQPDFVFHLAAQSLVRRSYDNPIETWQTNVMGTLHVLEALRKLDKS 66

Query: 123 RSVVVVTSDKCYENREWLWGYREDDPMGGHDPYSSSKGAAELVTSAYRRSFFANQPDNQV 182
            + V++TSDKCY+N EW+WGYRE D MGG DPYS+SKGAAEL   ++ +S+F  +  ++V
Sbjct: 67  CAAVIITSDKCYDNVEWVWGYRETDAMGGPDPYSASKGAAELAIRSHIKSYFP-KATSKV 125

Query: 183 GIASVRAGNVIGGGDFAADRLIPDFIRALEKEEPVVIRNPHAVRPWQFVLEPLSGYLQIA 242
            IA+ RAGNVIGGGD+A DR++PD ++A    + V +RNPH+ RPWQ VLEPLSGYL +A
Sbjct: 126 RIAAARAGNVIGGGDWADDRIVPDCVKAWANNDDVELRNPHSTRPWQHVLEPLSGYLSLA 185

Query: 243 QLLYEQGGAYAEGWNFGPADTDLQTVSQLC---ATFNHSLQKNDVGQVEVRLEGQARGPH 299
             L ++   + E +NFGP      +V +L    A +   ++  DV Q        A GP+
Sbjct: 186 AALSQRPELHGEPFNFGPPAQQNHSVLELVNQMALYWDQVRWKDVSQ-------SAIGPY 238

Query: 300 EAALLRLDISKVRQRLDWIPKMELYTALELTAQWYAGYLNNE-DLRALSENQIAFYQSL 357
           E+ LL+L+  K    L W   M     + +TA+WY  Y      + A++  Q+  Y  L
Sbjct: 239 ESGLLKLNCDKALHHLHWRAVMGFEDTVRMTAEWYRAYYQQPMQIAAVTGEQLDAYTKL 297


>gi|134094383|ref|YP_001099458.1| dTDP-glucose 4,6 dehydratase
           [Herminiimonas arsenicoxydans]
          Length = 367

 Score = 68.2 bits (165), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 138/342 (40%), Gaps = 33/342 (9%)

Query: 10  VFITGHTGFKGSWLTL-WLHLMGARVSGY-ALPAPTNPSLFHLARLHNCVQT--TTGDVR 65
           + +TG  GF GS   L WL      V     L    NP+  +LA L +  +      D+ 
Sbjct: 2   ILVTGGAGFIGSNFVLDWLAQSDEPVVNVDKLTYAGNPN--NLASLRDDTRHIFVHADIC 59

Query: 66  DPRHLAETLAAVQPDIVFHLAAQPLVRDSYATPVDTYATNVMGTVHLLEAVR-HTPSVRS 124
           D   + E L+  +P  + H AA+  V  S   P +   TN+ GT  LLEA R + P + S
Sbjct: 60  DSDKMQELLSTYKPTAIVHFAAESHVDRSIHGPAEFVRTNINGTFSLLEAARTYWPQLTS 119

Query: 125 VVVVTSDKCYENREWLWG--------YREDDPMGGHDPYSSSKGAAELVTSAYRRSFFAN 176
                    + + + ++G        + E      + PYS+SK A++ +  +Y  ++   
Sbjct: 120 AEKEQFRFLHVSTDEVYGTLGPDDAPFSETTAYAPNSPYSASKAASDHLVRSYHHTY--- 176

Query: 177 QPDNQVGIASVRAGNVIGGGDFAADRLIPDFIRALEKEEPVVIR-NPHAVRPWQFVLEPL 235
                +   +    N  G   F  ++LIP  I      +P+ I  +   +R W +V +  
Sbjct: 177 ----GLPTLTTNCSNNYGPYHF-PEKLIPLIIANALAGKPLPIYGDGQQIRDWLYVGDHC 231

Query: 236 SGYLQIAQLLYEQGGAYAEGWNFG--PADTDLQTVSQLCATFNHSLQKNDVG-QVEVRLE 292
           +   ++      Q G   E +N G      +L  V+ LC   + +LQ N  G     ++ 
Sbjct: 232 TAIRRVL-----QAGKPGETYNIGGWNEKANLDVVNTLCDMLD-ALQPNGAGSSYRKQIT 285

Query: 293 GQARGPHEAALLRLDISKVRQRLDWIPKMELYTALELTAQWY 334
             A  P       +D  K+ + L W P     + +  T QWY
Sbjct: 286 YVADRPGHDRRYAIDARKIERELGWKPAETFDSGIRKTVQWY 327


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 710,586
Number of extensions: 28035
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 275
Effective length of database: 726,862
Effective search space: 199887050
Effective search space used: 199887050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)