BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4267.p
         (386 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096343|ref|YP_001101418.1| hypothetical protein HEAR3190 [...   467   e-133

>gi|134096343|ref|YP_001101418.1| hypothetical protein HEAR3190
           [Herminiimonas arsenicoxydans]
          Length = 386

 Score =  467 bits (1202), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 251/391 (64%), Positives = 285/391 (72%), Gaps = 10/391 (2%)

Query: 1   MQLQLPEPGEDAQAASQTLQHLIAGEIAAAGGWISFERYMELALYAPQVGYYSGGSAKLG 60
           MQLQLP+P  DA AAS  LQ+LIA EI    GWISF RYMELALYAP +GYYSGG+AKLG
Sbjct: 1   MQLQLPQPIPDALAASHKLQNLIAEEIRRHDGWISFARYMELALYAPDLGYYSGGAAKLG 60

Query: 61  KEGDFTTAPEISPLYGATLAHLAAEVIAASPQVANVLLEFGAGTGKLAHDILTELQARDA 120
           K+GDFTTAPEI+ L+G TLAH A +++A   Q A  +LEFGAGTGKLA DILTE  A   
Sbjct: 61  KDGDFTTAPEITSLFGETLAHAAGDLMA---QSAPEILEFGAGTGKLALDILTECAAAGI 117

Query: 121 LPETYFIVEISAQLRARQQEALAAFAPKVQWLDALPETFSGVVVGNEVLDAMPVRLAVKA 180
             E Y IVE+S +LRARQQ+ LA F P+V WLD  P  FSGVV+GNEVLDAMPV L VK 
Sbjct: 118 HLEHYAIVELSGELRARQQQLLAGF-PQVSWLDDFPPAFSGVVLGNEVLDAMPVSLVVKG 176

Query: 181 AEGWLERGVALDGAGQLRFEDRAVAGLPLAQIPDAEDLPSGYLTELSPVAIGFMRTLGRM 240
              WLERGVA    G+  + DR      +AQIPD E+LP GYLTE+ PVA GFM TL  M
Sbjct: 177 EHAWLERGVAYTD-GKFVYADRPCDAALVAQIPDEENLPVGYLTEVHPVAAGFMGTLAEM 235

Query: 241 VA-----NGPGALAILPDYGFPAAEYYLYDRDQGTLMCHYRHHAHTDPFYWPGLQDITAH 295
            A     +G G  AIL DYGFPA EYYL  R +GTLMCHYRHHAH DPFY PGLQDITAH
Sbjct: 236 FAAGLEQSGKGGAAILFDYGFPAGEYYLDQRSEGTLMCHYRHHAHPDPFYLPGLQDITAH 295

Query: 296 VDFTAMAVAAVEQGAEVLAYTSQGAFLLNAGIGELLLRTSPEDSARYLPLANGMQKLISP 355
           VDFTAMA AAV  G E++ Y SQ AFLL AG+G+ LL+TSP D+  YLP AN +QKL SP
Sbjct: 296 VDFTAMAYAAVRSGLEMVGYMSQAAFLLAAGLGDRLLQTSPADARVYLPKANAVQKLTSP 355

Query: 356 AEMGELFKVLAIGKHVQWPARMLRHDRTHRL 386
           AEMGELFKVL +G  VQ P +  R D++HRL
Sbjct: 356 AEMGELFKVLVVGLGVQLPDQFDRMDQSHRL 386


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 758,401
Number of extensions: 32332
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 303
Effective length of database: 726,862
Effective search space: 220239186
Effective search space used: 220239186
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)