BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4265.p (218 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095287|ref|YP_001100362.1| two-component regulatory system... 258 1e-70 gi|134095857|ref|YP_001100932.1| two-component regulatory system... 191 3e-50 gi|134095798|ref|YP_001100873.1| OmpR family response regulator ... 185 1e-48 gi|134094768|ref|YP_001099843.1| response regulator in two-compo... 152 2e-38 gi|134096087|ref|YP_001101162.1| two-component system regulatory... 139 1e-34 >gi|134095287|ref|YP_001100362.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 220 Score = 258 bits (660), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 131/216 (60%), Positives = 169/216 (78%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MRVLL+EDDPM+GE++ +GLR++ + +DWV+DG +A++A+ + Y ++LLDLGLP K GL Sbjct: 1 MRVLLIEDDPMIGESLEEGLRKEQYAVDWVRDGHAAELAICSHTYDIVLLDLGLPGKQGL 60 Query: 61 AVLRTLRERGNTIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 AVL R + VLI +ARDA A RV GLD+GADDYL+KPFDL+EL ARMRAL RR++ Sbjct: 61 AVLTNYRRKHGEAAVLIISARDATAMRVQGLDSGADDYLVKPFDLDELFARMRALLRRRS 120 Query: 121 GRAESLVQVREVVLNPATHEVTVGGNPVNLSAREFALLQAFMDRPGVVLSRAQLEEKLYG 180 GR S + RE+ +NPATHE G V+ SAREFALL A +D PG V+SR QLEE+LYG Sbjct: 121 GRVSSELIYRELTMNPATHEAAFNGASVHFSAREFALLLALIDPPGRVMSRTQLEERLYG 180 Query: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLV 216 W++ IESN +EV+IH LRKK+G+DFIKNVRGVGY + Sbjct: 181 WNEEIESNTIEVYIHGLRKKLGTDFIKNVRGVGYKI 216 >gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 191 bits (484), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 102/221 (46%), Positives = 149/221 (67%), Gaps = 8/221 (3%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+L+VEDD ++ A+ + L Q G+ +D+ +G+ A+ AL + YA++LLD+ LP+ DGL Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIALPKMDGL 60 Query: 61 AVLRTLRERGNTIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRR-- 118 AVLR LRER + +PVLI TARD + DRVAGLD GADDY+ KPFDL E AR+RAL RR Sbjct: 61 AVLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRRGQ 120 Query: 119 -QAGRAESLVQVREVVLNPATHEVTVGGNPVNLSAREFALLQAFMDRPGVVLSRAQLEEK 177 AG++ + +R + H + PV LS RE A+ + + R G V+++ Q+ ++ Sbjct: 121 FDAGKSLTHGGLR---FDLEAHRLFHNDVPVELSVRELAVFEVLLSRQGQVVTKEQMVDR 177 Query: 178 LYGWDDSIESNAVEVHIHALRKKVG--SDFIKNVRGVGYLV 216 L+GW D SNA+EV++H +RKK+ + I+ VRG+GYL+ Sbjct: 178 LFGWGDDGGSNAIEVYVHRMRKKLEPYNITIRTVRGMGYLL 218 >gi|134095798|ref|YP_001100873.1| OmpR family response regulator [Herminiimonas arsenicoxydans] Length = 233 Score = 185 bits (470), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 95/218 (43%), Positives = 141/218 (64%), Gaps = 2/218 (0%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LL EDD ++ + + + LRQ G+ D V++G AD AL T+D+ +L+LDLGLP+ GL Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSGYVTDCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 AVLRTLRERGNTIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 VL+ LR R + +PVLI TA D++ RV GLD GADD++ KPF L EL AR+RAL+RR A Sbjct: 61 EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120 Query: 121 GRAESLVQVREVVLNPATHEVTVGGNPVNLSAREFALLQAFMDRPGVVLSRAQLEEKLYG 180 G ++++ + + + + LSARE LL+ + R G ++S+ QL + L Sbjct: 121 GGGPTVIKHGPLSYDQVGRIAYINDQMLELSARELGLLEVLLQRSGRLVSKEQLVDHLCE 180 Query: 181 WDDSIESNAVEVHIHALRKK--VGSDFIKNVRGVGYLV 216 W + + +NA+EV++H LRKK +G I VRG+GY + Sbjct: 181 WSEEVSNNAIEVYVHRLRKKIEIGGLRIATVRGLGYCL 218 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 230 Score = 152 bits (383), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 134/223 (60%), Gaps = 9/223 (4%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 M++L+VED+ GE +++GL + GF +D+ +G T +Y +++LD+ LP DG Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPDIDGW 60 Query: 61 AVLRTLRERGNTIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 +L+ LR GN +P L TARD VADRV GL+ GADDY++KPF EL AR+R L RR Sbjct: 61 KILQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRR-- 118 Query: 121 GRAESLV---QVREVVLNPATHEVTVGGNPVNLSAREFALLQAFMDRPGVVLSRAQLEEK 177 G LV QV ++VL+ A T G + L+ +EF LL+ + G VL R+ + + Sbjct: 119 GIPSPLVDRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQ 178 Query: 178 LYGWDDSIESNAVEVHIHALRKKVGSDF----IKNVRGVGYLV 216 ++ + + ++N ++V I LR K+ D+ I +RGVGY++ Sbjct: 179 IWDINFNSDTNVIDVAIRRLRSKMDDDYEPKLISTIRGVGYVL 221 >gi|134096087|ref|YP_001101162.1| two-component system regulatory protein [Herminiimonas arsenicoxydans] Length = 229 Score = 139 bits (349), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 129/221 (58%), Gaps = 8/221 (3%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+L++ED+ + + L G+ +D +G + +Y ++LD+ LP DGL Sbjct: 1 MRILIIEDNADIVANLYAFLEPRGYVLDCAANGYAGFALAAQHEYDAVILDIKLPGIDGL 60 Query: 61 AVLRTLR-ERGNTIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQ 119 + R +R E N PVL+ TARD + D+VAG D+GADDYL+KPF L E+ R++AL RR Sbjct: 61 TLCRKMRDELQNDTPVLMLTARDTLDDKVAGFDSGADDYLVKPFSLLEVEVRLKALIRRA 120 Query: 120 AGRAE--SLVQVREVVLNPATHEVTVGGNPVNLSAREFALLQAFMDRPGVVLSRAQLEEK 177 G+ + + + V +++ + +T++V G P+ L+ F +L M V+SR LE + Sbjct: 121 RGKNQGTNFLSVGDLIFDTSTYQVKRDGVPIALTKTGFKILSCLMKEAPKVVSRETLELE 180 Query: 178 LYGWDDSIESNAVEVHIHALRKKVGSD----FIKNVRGVGY 214 ++G D +S+A+ HIHALR+ + ++ V+G+GY Sbjct: 181 VWG-DHPPDSDALRTHIHALRQALDKSHPFAMLRTVQGIGY 220 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 420,322 Number of extensions: 16825 Number of successful extensions: 137 Number of sequences better than 1.0e-08: 26 Number of HSP's gapped: 116 Number of HSP's successfully gapped: 26 Length of query: 218 Length of database: 1,000,347 Length adjustment: 78 Effective length of query: 140 Effective length of database: 743,337 Effective search space: 104067180 Effective search space used: 104067180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)