BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4264.p (451 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two... 321 5e-89 gi|134095799|ref|YP_001100874.1| putative two-component sensor k... 190 1e-49 gi|134095856|ref|YP_001100931.1| putative transmembrane sensor h... 182 3e-47 gi|134093857|ref|YP_001098932.1| putative two-component system s... 122 3e-29 gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two... 120 1e-28 >gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing [Herminiimonas arsenicoxydans] Length = 430 Score = 321 bits (822), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 188/425 (44%), Positives = 257/425 (60%), Gaps = 25/425 (5%) Query: 36 NQIFDYQMRQIAASLPRQAFSPISPGQQFPELED---EIMMQIWDSRGAVIYHSHARGAM 92 N++FDYQ++QIA +LP + +S G P +D EI++QIW ++G +I+ S + Sbjct: 2 NEMFDYQLKQIAGALP----AHLSAGHDLPIDDDPDQEILVQIWSTKGELIFTSAPNIQL 57 Query: 93 PRQAELGFANVSGPNGMWRVYSAQIGSTVVQVAQPQSARDEIAAQMAVKTVVPLLLLFPL 152 + GF ++S WRVYS ++QVAQP++ R+E+AA MA+++++P L++ P+ Sbjct: 58 QQIEGFGFKSLSLRGKRWRVYSEADQDRIIQVAQPKAVRNEMAASMALRSLLPFLVMIPV 117 Query: 153 IGVLSWVAVSRGLAPVRKAAAEVAARDMNSLQPLSDVGMPQEIQPLTHALNDLLARLKHS 212 + + W+ V R L P+ A + R N+L+PL P E+QP+ ALNDLL RL + Sbjct: 118 LALFIWIVVGRSLYPLHHLARAIGRRSSNALEPLPGERYPPELQPMLAALNDLLTRLDQT 177 Query: 213 TETQRAFVADAAHELRTPLTALRLQAQLAERATDEVERRAAFADLKSGLERATHLVHQLL 272 TQRAFVADAAHELRTPLTAL+LQ QL ER D+ +R F L L RATHLV QLL Sbjct: 178 LVTQRAFVADAAHELRTPLTALKLQLQLVERENDDRQRATGFRKLHERLNRATHLVQQLL 237 Query: 273 TLARQEPDAMNFA--EVDLRALLGSVVGDLSSVAEHGSIDLGLS---DQGDDGRPLRVQG 327 TLAR E + + ++DLR L VV D + AEH +DLG++ DQG D + G Sbjct: 238 TLARHEYRIADRSSQKIDLRQLTARVVSDYAPQAEHKGVDLGIAINDDQGSDA--AMITG 295 Query: 328 NADALRILFNNLVDNALRYTPAGGVVDVGFDLSTPGACTVV-IQDSGPGIAESELPRVFD 386 N D+LRIL NLVDNA+RYTP+ G VDV + ST ++ ++D+GPGI + RVFD Sbjct: 296 NQDSLRILLGNLVDNAVRYTPSHGRVDVTVNTSTADHTVLLRVKDNGPGIPVQDQERVFD 355 Query: 387 RFYRAQRGHDQGGSRAAFGSGLGLAIVRQIADLHRVPVSLR--NTGHGLQARVEFPLLAA 444 RFYR D G GSGLGL I + IA H + L ++ GL V FPLL Sbjct: 356 RFYR----RDGTGES---GSGLGLFIAKTIATQHEATIELSTADSKGGLIVTVRFPLLCT 408 Query: 445 SRQSG 449 S Q+G Sbjct: 409 S-QTG 412 >gi|134095799|ref|YP_001100874.1| putative two-component sensor kinase transcriptional regulatory protein [Herminiimonas arsenicoxydans] Length = 512 Score = 190 bits (482), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 119/314 (37%), Positives = 174/314 (55%), Gaps = 16/314 (5%) Query: 121 VVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAEVAARDM 180 +VQV + R ++ Q+ +VP ++ P+ +L W A++RGL P+ + + AR Sbjct: 180 LVQVGETLDKRSQLVNQIIKGVIVPEFIILPIALILVWFALTRGLRPLAELQQRIRARRP 239 Query: 181 NSLQPLSDVGMPQEIQPLTHALNDLLARLKHSTETQRAFVADAAHELRTPLTALRLQAQL 240 + L P+ +P+EI PL +LND+L RL S + Q+ F+ADAAH+++TPL +R+Q++L Sbjct: 240 DDLSPIDSGHVPEEIIPLVGSLNDMLERLSQSIKVQKRFIADAAHQMKTPLAGMRMQSEL 299 Query: 241 AERATDEVERRAAFADLKSGLERATHLVHQLLTLAR---QEPDAMNFAEVDLRALLGSVV 297 A R TD E + L + AT +V+QLL LAR Q P ++L L V Sbjct: 300 ALRQTDHAEIHKSLEQLAKSSKSATRMVNQLLALARAENQTPQTKPMQVLELSELARDTV 359 Query: 298 GDLSSVAEHGSIDLGLSDQGDDGRPLRVQGNADALRILFNNLVDNALRYTPAGG--VVDV 355 + + + IDLG +Q D+ + +G+A L L NNL+DNAL YTPAGG V V Sbjct: 360 QNWVQTSFNRKIDLGF-EQPDEA--VMARGDATMLHELLNNLIDNALSYTPAGGNATVRV 416 Query: 356 GFDLSTPGACTVVIQDSGPGIAESELPRVFDRFYRAQRGHDQGGSRAAFGSGLGLAIVRQ 415 D G + ++D+GPGIA E +F+RFYR GS GSGLGLAIVR+ Sbjct: 417 RTD-QQAGLAFLEVEDNGPGIAPHERSHIFERFYRIL------GSNVE-GSGLGLAIVRE 468 Query: 416 IADLHRVPVSLRNT 429 IA H + + N Sbjct: 469 IALQHNAEIEILNN 482 >gi|134095856|ref|YP_001100931.1| putative transmembrane sensor histidine kinase transcription regulator protein [Herminiimonas arsenicoxydans] Length = 448 Score = 182 bits (463), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 141/451 (31%), Positives = 221/451 (49%), Gaps = 43/451 (9%) Query: 19 IIVLAGVALYFQARGEANQIFDYQMRQIAASLPRQA----------FSPISPGQQFPELE 68 I+++ V YF R AN ++D ++ +IA + +P + + E Sbjct: 8 ILLIDIVGSYFVVRHVANDVYDVELNEIAREMLLHVTHNKGEMGFDLAPEAERTLLLDKE 67 Query: 69 DEIMMQIWDSRGAVIYHSHARGAMPRQAELGFA-NVSGPNGMWRVYSAQIG--------- 118 D++ I G +I +P Q + + + +G+ + S ++ Sbjct: 68 DQVYYAIRTMDGNLIA---GDPTLPVQTVIKSGKDTAYYDGVLQGQSVRVALLRGQPLLH 124 Query: 119 ----STVVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAE 174 ++QVA+ Q R+ + ++ ++P +LL + G+L W V+ GLAP+RK E Sbjct: 125 PATEPVMIQVAETQVKRNRHERALLIQLILPQVLLILIAGILIWRGVAHGLAPLRKLQQE 184 Query: 175 VAARDMNSLQPLSDVGMPQEIQPLTHALNDLLARLKHSTETQRAFVADAAHELRTPLTAL 234 V R L P++ +P E++PL A+NDL+ R+ Q F+AD AH+LRTP+ L Sbjct: 185 VGMRSHLDLSPIAADNVPGEVEPLVGAVNDLMTRVDAVLGFQGRFIADTAHQLRTPVAGL 244 Query: 235 RLQAQLAERATDEVERRAAFADLKSGLERATHLVHQLLTLARQEPD--AMNFAEVDLRAL 292 + +LA R D + + A L + ER + LV QLL+LAR EP+ A+NFA DL L Sbjct: 245 KAHIELALRENDLTQVKRALGHLYTSAERLSRLVSQLLSLARNEPNNVAVNFAPFDLNQL 304 Query: 293 LGSVVGDLSSVAEHGSIDLGLSDQGDDGRPLRVQGNADALRILFNNLVDNALRYTPAGGV 352 + +A IDLG G+P+ + G A + + NNLVDNA+RYTP GG Sbjct: 305 ALRAAQEWVPLAYKKQIDLGFDTA---GQPVLLNGEAARVTEMINNLVDNAIRYTPPGGR 361 Query: 353 VDVGFDLSTPGACTVVIQDSGPGIAESELPRVFDRFYRAQRGHDQGGSRAAFGSGLGLAI 412 V V + +++ D G I E R+F+RF+R H++ GSGLGLAI Sbjct: 362 VTV--HVRQDEHAHLIVSDDGARIPVEERTRIFERFHRLLGSHEE-------GSGLGLAI 412 Query: 413 VRQIADLHRVPVSLRN--TGHGLQARVEFPL 441 V +IA LH ++L + G G V FP+ Sbjct: 413 VHEIATLHNATITLEDDVDGVGNTFTVSFPV 443 >gi|134093857|ref|YP_001098932.1| putative two-component system sensory histidine kinase [Herminiimonas arsenicoxydans] Length = 467 Score = 122 bits (306), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 107/318 (33%), Positives = 165/318 (51%), Gaps = 27/318 (8%) Query: 115 AQIGST----VVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRK 170 A++GST + VA+ + R ++ ++ K V ++L L +++ V + RGL P+RK Sbjct: 143 AKLGSTKQPVTIYVARAYAERTDMFSEYRRKIAVSVMLSAALAALMASVMLRRGLKPLRK 202 Query: 171 AAAEVAARDMNSLQ-PLSDVGMPQEIQPLTHALNDLLARLKHSTETQRAFVADAAHELRT 229 A A LQ L D G P E+ PL HA N +L RL+ F D AHE RT Sbjct: 203 MARHAALVRPGKLQHQLDDQGAPSELLPLIHAFNAMLGRLQEGYLRLSQFSTDLAHEFRT 262 Query: 230 PLTALRLQAQLA---ERATDEVERRAAFADLKSGLERATHLVHQLLTLARQEPDAMNFAE 286 P+T+L Q+Q+A R+ DE ++ ++++ LER + ++ +L LAR E + M+ A Sbjct: 263 PVTSLLGQSQVALGRPRSADEY-KQLVISNMEE-LERLSRMIDSMLFLARVEREQMSVAR 320 Query: 287 VDLRALLGSVVGDLSSVAEHGSIDLG--LSDQGDDGRPLRVQGNADALRILFNNLVDNAL 344 L L+ L + E S + G LS+QGD V +A LR +NL+ NA+ Sbjct: 321 YPL--LVQDEFDRLCNFFEDMSDERGLILSNQGDGI----VMADAQLLRRALSNLLSNAI 374 Query: 345 RYTPAGGVVDVGFDLSTPGACTVV--IQDSGPGIAESELPRVFDRFYRAQRGHDQGGSRA 402 R+ G +++ S A VV + ++G I +P +FDRFYRA D + + Sbjct: 375 RHADKGSTIELR---SRQEAEFVVLSVTNTGATIGPEHMPHLFDRFYRA----DSARTDS 427 Query: 403 AFGSGLGLAIVRQIADLH 420 + +GLGL+IVR I LH Sbjct: 428 SESTGLGLSIVRAIMTLH 445 >gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two-component regulatory system with CusR, regulation of copper resistance, senses copper ions [Herminiimonas arsenicoxydans] Length = 482 Score = 120 bits (301), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 97/300 (32%), Positives = 152/300 (50%), Gaps = 20/300 (6%) Query: 148 LLFPLIG-VLSWVAVSRGLAPVRKAAAEVAARDMNSLQP-LSDVGMPQEIQPLTHALNDL 205 L+ LI V++W AV G P+RK + E+ A + L LS +P E+ L + ND+ Sbjct: 183 LIVALIALVVAWFAVQWGHRPIRKVSREIRAIRSSQLDVRLSPTDVPIELAELAVSFNDM 242 Query: 206 LARLKHSTETQRAFVADAAHELRTPLTALRLQAQLA---ERATDEVERRAAFADLKSGLE 262 L R++ F AD AHELRTP+T L Q Q+A R+ DE R +++L+ + Sbjct: 243 LGRIEDGFAKLANFSADIAHELRTPVTNLSTQTQVALSQVRSADEY-REVLYSNLEE-FD 300 Query: 263 RATHLVHQLLTLARQEPDAMN--FAEVDLRALLGSVVGDLSSVAEHGSIDLGLSDQGDDG 320 R + ++ +L LA+ E D N D+ L+ + +AE +I L LS Q Sbjct: 301 RLSLMIGDMLFLAQTENDPRNLRLTNTDITGLVQGLFDYFEVLAEDANITLTLSGQ---V 357 Query: 321 RPLRVQGNADALRILFNNLVDNALRYTPAGGVVDVGFDLSTPGACTVVIQDSGPGIAESE 380 +P + + D + +NL+ NA+RY+ G V V T+ +++ G IAE + Sbjct: 358 KP--IIADRDMMLRALSNLLSNAIRYSLPGSSVIVRLH-QDAKRTTICVENPGEQIAEDD 414 Query: 381 LPRVFDRFYRAQRGHDQGGSRAAFGSGLGLAIVRQIADLHRVPVSLRNTGHGLQARVEFP 440 LP++FDRF+R D R + G+GLGLAIV+ I + H V + ++ +E P Sbjct: 415 LPKLFDRFFRV----DPSRQRKS-GAGLGLAIVKSIIEAHDGKVQATSRNGLIKFLIELP 469 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 773,337 Number of extensions: 31106 Number of successful extensions: 178 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 19 Length of query: 451 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 366 Effective length of database: 720,272 Effective search space: 263619552 Effective search space used: 263619552 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)