BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4258.p
         (135 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096499|ref|YP_001101574.1| hypothetical protein HEAR3350 [...   115   1e-27

>gi|134096499|ref|YP_001101574.1| hypothetical protein HEAR3350
           [Herminiimonas arsenicoxydans]
          Length = 130

 Score =  115 bits (287), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 91/130 (70%), Gaps = 1/130 (0%)

Query: 6   KQDQAAPAAHANPGLTAGLLGLAKNLLGLIISRIELASLEMSEIGANLVRFAVIFVLAAV 65
           +Q  A P  +  PGL  G+  LA+N  GL++SRIELA+LE++E+ AN ++ A++F L  V
Sbjct: 2   EQPSARPQ-NDRPGLIGGVAELARNTFGLLMSRIELAALELAEVRANALKLALLFALGVV 60

Query: 66  ALWFAIAFWSVLIVMLAWDTWGWKILALLGFIFSVATAGLVWYARSVLLQGKLSLPQTMG 125
             +FAI +W+VLI  L+W   GWKIL +L  +F+V T G+ +Y +S++ QGKLS+P TM 
Sbjct: 61  IAFFAIGYWTVLIAYLSWPVLGWKILLILALVFTVITGGIFYYLKSLIEQGKLSMPATME 120

Query: 126 ELRKDRDALL 135
           ELR D DALL
Sbjct: 121 ELRNDHDALL 130


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 168,756
Number of extensions: 4336
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 1,000,347
Length adjustment: 72
Effective length of query: 63
Effective length of database: 763,107
Effective search space: 48075741
Effective search space used: 48075741
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 124 (52.4 bits)