BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4257.p
         (149 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096498|ref|YP_001101573.1| hypothetical protein HEAR3349 [...    57   3e-10

>gi|134096498|ref|YP_001101573.1| hypothetical protein HEAR3349
           [Herminiimonas arsenicoxydans]
          Length = 139

 Score = 57.4 bits (137), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 5   SEDRMTDPDHGMTHEERKRKVLAQGALYRLGVMEAREVVRENLSAESLAKGALSRVGHFA 64
           ++DR    +  +   +RK ++L Q   YR G+  AR  VR +L A+ +AK A+  +   A
Sbjct: 2   TQDRKLQEEETLA--QRKERLLLQCRAYRSGIGRARNTVRAHLGADEIAKTAIGLISARA 59

Query: 65  VSLFGGGKTVQSIKSLSAGGLGSVNLQTVMPLLMTGASLLSRRWLRKPMLLGGVMAAVGG 124
            S       +   +++S        LQ ++PL+++G SLLSRR L +P+L G  +A    
Sbjct: 60  QSALANFSDLLDFRNMSGA-----KLQRLLPLVVSGVSLLSRRSLWRPILKGAAVAGTAV 114

Query: 125 LAYYFSQRGNAPE 137
              YF  R  A +
Sbjct: 115 ATIYFLSRKKAKK 127


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 245,318
Number of extensions: 7449
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 75
Effective length of database: 756,517
Effective search space: 56738775
Effective search space used: 56738775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)