BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4256.p
         (239 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094293|ref|YP_001099368.1| putative outer membrane protein...   270   3e-74
gi|134095751|ref|YP_001100826.1| putative outer membrane protein...    77   8e-16

>gi|134094293|ref|YP_001099368.1| putative outer membrane protein;
           putative peptidoglycan-associated (lipo)-protein
           [Herminiimonas arsenicoxydans]
          Length = 225

 Score =  270 bits (691), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 148/214 (69%), Positives = 176/214 (82%), Gaps = 2/214 (0%)

Query: 1   MKKLSIAAIAGVLALSGCADMSPTQRGTATGAGIGAGIGGIIGAATGGGGGGRALGGAAI 60
           M+ L I ++A +LALSGCA+MSPT+RGTA GAGIGAG+G +IG   GG       GGAA+
Sbjct: 1   MRTLMIGSLAAILALSGCANMSPTERGTAQGAGIGAGLGALIGGVGGGSKN--IAGGAAV 58

Query: 61  GGAIGAVAGNIWSNRMENQKRAMEQATQGTGVQVTQTADNRLKLEIPSDISFDTGRADIK 120
           GG +GAVAGN+WS+RMENQKRAMEQATQGTGVQVTQT+DNRLKL+IPSDISF TGR+DI 
Sbjct: 59  GGILGAVAGNVWSSRMENQKRAMEQATQGTGVQVTQTSDNRLKLDIPSDISFATGRSDIN 118

Query: 121 PEMRPVLDRFAATLVENPATTVTIVGHTDNTGSDAINDPLSQERAARTRDYLTSRGVAAN 180
              RP+LDRFA  LV+NPA TVTI+GHTD+TGSDAIN+PLS +RA+RTRDYL  RGVA  
Sbjct: 119 SSFRPILDRFATGLVDNPAATVTIIGHTDSTGSDAINNPLSFDRASRTRDYLAGRGVAPQ 178

Query: 181 RFTIMGRGSHEPLVPNTSDANRAKNRRVEIFVAE 214
           R  + GRGS EP+  N ++A RA+NRRVEI+VAE
Sbjct: 179 RIHVDGRGSREPVASNANEAGRARNRRVEIYVAE 212


>gi|134095751|ref|YP_001100826.1| putative outer membrane protein 3a
           (II*;G;d) [Herminiimonas arsenicoxydans]
          Length = 205

 Score = 77.0 bits (188), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 56/97 (57%)

Query: 116 RADIKPEMRPVLDRFAATLVENPATTVTIVGHTDNTGSDAINDPLSQERAARTRDYLTSR 175
           +A +KP+ +  LD  A+ L +     +  VGHTD+ GSDA N  LS  RA   + YL  +
Sbjct: 104 KAVLKPDGKAKLDDLASKLKDLNLEVIIAVGHTDSIGSDAYNQKLSIRRAEAVKGYLVGK 163

Query: 176 GVAANRFTIMGRGSHEPLVPNTSDANRAKNRRVEIFV 212
           G+ A R    G+G  +P+  N + A RA+NRRVEI V
Sbjct: 164 GIDAKRVYTEGKGEKQPVATNKTAAGRAQNRRVEIEV 200


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 284,118
Number of extensions: 9162
Number of successful extensions: 23
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 2
Length of query: 239
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 160
Effective length of database: 740,042
Effective search space: 118406720
Effective search space used: 118406720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)