BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4253.p
         (249 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein...    59   2e-10
gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protei...    57   6e-10
gi|134094008|ref|YP_001099083.1| short chain dehydrogenase [Herm...    57   1e-09

>gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein]
           reductase [Herminiimonas arsenicoxydans]
          Length = 247

 Score = 58.9 bits (141), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 111/244 (45%), Gaps = 27/244 (11%)

Query: 7   LVVGGSKGTGLALVEHLLADGQRVSVLARS-ACALPPSPLLT----WLPVDVTDTVALHT 61
           LV G S+G G A+ + L   G +V   A S + A   S  L      + +DV D      
Sbjct: 12  LVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESGKGVVLDVNDAARSVA 71

Query: 62  ALDACVAGQGKI----DSAVFMQRH---RASDDAFETDLAVALTA----TRATIDHLVAR 110
            +D      G +    ++A   Q     R  D+ +++ +A  LT+    +RA +  ++  
Sbjct: 72  LIDEIQKEFGTVTILVNNAGITQDQLAMRMKDEEWDSVIATNLTSVGRLSRAVLRGMMKA 131

Query: 111 KHFSGSAQGNGIVMVSSIADHYIAPEQDLGYHVSKAGLVQLARFYALQLGPLGLRVNVVS 170
           KH         I+ ++S+        Q + Y  +KAG+  ++R  A ++G   + VN V+
Sbjct: 132 KHGR-------IINITSVVGSTGNAGQ-MNYAAAKAGVAGMSRALAREIGSRNITVNCVA 183

Query: 171 PCVVIKEAAQEYYRQNSWITDRFEHFIPLRRAGSSQDIINAILFLTGAQSSYITGQNIVV 230
           P  +  +  +    Q   I+   +  +PL R G  +DI  A+ FL   Q+SYITG  + V
Sbjct: 184 PGFIDTDMTKTLSEQQ--ISALLQQ-VPLGRLGVPEDIAAAVSFLASPQASYITGTTLHV 240

Query: 231 DGGL 234
           +GG+
Sbjct: 241 NGGM 244


>gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protein)
           reductase [Herminiimonas arsenicoxydans]
          Length = 239

 Score = 57.4 bits (137), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 6/113 (5%)

Query: 122 IVMVSSIADHYIAPEQDLGYHVSKAGLVQLARFYALQLGPLGLRVNVVSPCVVIKEAAQE 181
           I+ VSSIA         + Y  +K  L    +  AL+L   G+ VN V+P ++     +E
Sbjct: 132 IINVSSIA-AVTGNRGQVNYSAAKGALHSATKSLALELASRGITVNAVAPGIIATGMIEE 190

Query: 182 YYRQNSWITDRFEHFIPLRRAGSSQDIINAILFLTGAQSSYITGQNIVVDGGL 234
            +   +      ++ +P++RAG  +++ + I FL    ++YI+GQ I ++GG+
Sbjct: 191 AFDDKA-----IQNIVPMKRAGKPEEVADLIGFLASPNAAYISGQIISINGGM 238


>gi|134094008|ref|YP_001099083.1| short chain dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 249

 Score = 56.6 bits (135), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 8/118 (6%)

Query: 119 GNGIVMVSSIADHYIAPEQDLGYHVSKAGLVQLARFYALQLGPLGLRVNVVSPCVVIKE- 177
           G  IV VSS+A     P + + Y  SK  +  L    A ++   G+RVN V P V+  E 
Sbjct: 136 GGAIVNVSSVAARTGGPGEYVDYAASKGAIDTLTIGLAKEVATEGIRVNAVRPGVIYTEI 195

Query: 178 --AAQEYYRQNSWITDRFEHFIPLRRAGSSQDIINAILFLTGAQSSYITGQNIVVDGG 233
             +  E  R      DR +  +P++R G + ++  A+L+L   ++SY TG  + V GG
Sbjct: 196 HASGGEPGR-----VDRVKGNVPMQRGGEANEVAQAVLWLLSDKASYTTGTLLDVTGG 248


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 472,548
Number of extensions: 17780
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 4
Length of query: 249
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 170
Effective length of database: 740,042
Effective search space: 125807140
Effective search space used: 125807140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)