BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4250.p (264 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093973|ref|YP_001099048.1| putative mannose-1-phosphate gu... 105 3e-24 gi|134094367|ref|YP_001099442.1| glucose-1-phosphate cytidylyltr... 79 2e-16 gi|134093642|ref|YP_001098717.1| putative nucleotidyl transferas... 76 2e-15 gi|134094384|ref|YP_001099459.1| dTDP-glucose pyrophosphorylase ... 70 1e-13 >gi|134093973|ref|YP_001099048.1| putative mannose-1-phosphate guanyltransferase [Herminiimonas arsenicoxydans] Length = 391 Score = 105 bits (261), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/250 (30%), Positives = 126/250 (50%), Gaps = 29/250 (11%) Query: 1 MRALLLAAGLGTRLRPLTDFLPKCLVPIAGRPLLDYWIETLLRQGVEDILINTHYRADLV 60 M+A++LAAG GTR++PLT LPK ++PI G+P+++Y +E L++ G+ +I++N Y + Sbjct: 1 MKAMILAAGKGTRVQPLTYELPKPMIPILGKPVMEYLVEHLVKYGITEIMVNVSYLHQKI 60 Query: 61 ERYIA-ASTWCDRVTLVHE----------PQLLGTAGTALTHRQFFG--EQPFLLAHADN 107 E Y + ++ E P+ +G+AG ++F G ++ L+ D Sbjct: 61 EDYFGEGQRFGAQIGYSFEGYMTDDGEVMPKPIGSAGGLKKIQEFGGFFDETTLVICGDA 120 Query: 108 LTRFDCRDFLSTHRNRPHGTALTMMLFETPDPQSC---GIVELDTSGVVQVFHEKQPNPP 164 L D + L HR + AL ++ + P+ G+V D G V F EK P P Sbjct: 121 LIDLDIKSALFEHRQK---GALVSIITKEVAPEKTVDYGMVVTDEEGRVLSFQEK-PKPE 176 Query: 165 ---GNLANAAVYVVEPEVLTWLASLGRHEIDFSTEVIPRYLGH-IATFANTSYHR--DIG 218 NLA+ +Y+ EPEVL + S E D +++ P + + FA + DIG Sbjct: 177 EALSNLASTGIYIFEPEVLELIPS--GEEFDIGSQLFPLLVEKGVPFFAQKRFFNWIDIG 234 Query: 219 TVQS-WAQAQ 227 V+ WA +Q Sbjct: 235 NVKDYWAVSQ 244 >gi|134094367|ref|YP_001099442.1| glucose-1-phosphate cytidylyltransferase [Herminiimonas arsenicoxydans] Length = 253 Score = 79.0 bits (193), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 30/208 (14%) Query: 1 MRALLLAAGLGTRLRPLTDFLPKCLVPIAGRPLLDYWIETLLRQGVEDILINTHYRADLV 60 M+ +LLA G GTRL TD +PK +VPI G+P+L + ++T R G +D + Y+A+++ Sbjct: 1 MKVILLAGGFGTRLAEYTDVIPKPMVPIGGKPILWHIMQTYARFGHKDFYVALGYKAEVI 60 Query: 61 ERYI------------------AASTWCD----RVTLVHEPQLLGTAGTALTHRQFFGEQ 98 + Y S D RVTLV+ + T G R G + Sbjct: 61 KEYFLNYRALNADFTIDLASGGVTSLQVDPVDWRVTLVNTGEASMTGGRVKRMRSLIGNE 120 Query: 99 PFLLAHADNLTRFDCRDFLSTHRNRPHGTALTMMLFETPDPQSCGIVELDTSGV-VQVFH 157 +L + D + D L+ HR+ HG +T+ + + ELD G V+ F Sbjct: 121 TCMLTYGDGVADIDLDALLAFHRS--HGKMVTV----SAVRPAARFGELDLDGARVESFQ 174 Query: 158 EKQPNPPGNLANAAVYVVEPEVLTWLAS 185 EK P N ++ EP +A Sbjct: 175 EK-PQLQEGWINGGYFIFEPAFFDMIAG 201 >gi|134093642|ref|YP_001098717.1| putative nucleotidyl transferase [Herminiimonas arsenicoxydans] Length = 236 Score = 75.9 bits (185), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 40/107 (37%), Positives = 61/107 (57%), Gaps = 1/107 (0%) Query: 1 MRALLLAAGLGTRLRPLTDFLPKCLVPIAGRPLLDYWIETLLRQGVEDILINTHYRADLV 60 M+A++ AAG G R+RPLTD PK L+ + GRPL+ + I L+R G++DI+IN + ++ Sbjct: 1 MKAMIFAAGRGERMRPLTDTCPKPLLKVRGRPLIVWHILNLVRAGIKDIVINHAHLGGMI 60 Query: 61 ERYIA-ASTWCDRVTLVHEPQLLGTAGTALTHRQFFGEQPFLLAHAD 106 E + + + E + L TAG R G++PFL AD Sbjct: 61 EEALGNGEQFGANLIYSAEGEALETAGGVAQARHLLGDEPFLALAAD 107 >gi|134094384|ref|YP_001099459.1| dTDP-glucose pyrophosphorylase [Herminiimonas arsenicoxydans] Length = 301 Score = 69.7 bits (169), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 95/209 (45%), Gaps = 13/209 (6%) Query: 2 RALLLAAGLGTRLRPLTDFLPKCLVPIAGRPLLDYWIETLLRQGVEDI-LINTHYRADLV 60 + ++LA G GTRL P+T + K L+P+ +P++ Y + TL+ G+ DI LI+T Sbjct: 12 KGIILAGGSGTRLYPVTISVSKQLLPVYDKPMIYYPLTTLMLAGIRDILLISTPQDTPRF 71 Query: 61 ERYIA-ASTWCDRVTLVHEPQLLGTAGTALTHRQFFGEQPFLLAHADNLTR---FDCRDF 116 + + S W +T +P G A + R F P L DN+ FD + Sbjct: 72 QELLGDGSQWGINLTYAVQPTPDGLAQAFIIGRSFIDNGPSALILGDNIYYGHAFDQQ-- 129 Query: 117 LSTHRNRPHGTALTMMLFETPDPQSCGIVELDTSGVVQVFHEKQPNPPGNLANAAVYVVE 176 L R G+ T+ + DP+ G+VE D + EK P N A +Y + Sbjct: 130 LRQASERRSGS--TVFAYHVQDPERYGVVEFDKARRAISIEEKPLIPKSNYAVTGLYFYD 187 Query: 177 PEVLTWLASL---GRHEIDFSTEVIPRYL 202 +V AS+ R E++ T+V YL Sbjct: 188 DQVCDIAASIKPSARGELEI-TDVNRTYL 215 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.136 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 479,515 Number of extensions: 18813 Number of successful extensions: 54 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 50 Number of HSP's successfully gapped: 4 Length of query: 264 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 184 Effective length of database: 736,747 Effective search space: 135561448 Effective search space used: 135561448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)