BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4249.p
         (351 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095231|ref|YP_001100306.1| glutathione-dependent formaldeh...   169   3e-43
gi|134094301|ref|YP_001099376.1| putative glutathione-dependent ...   145   2e-36

>gi|134095231|ref|YP_001100306.1| glutathione-dependent formaldehyde
           dehydrogenase [Herminiimonas arsenicoxydans]
          Length = 369

 Score =  169 bits (427), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/360 (32%), Positives = 181/360 (50%), Gaps = 31/360 (8%)

Query: 8   RAAILAQLQQPLIVDEVELPPQLEVGQVLVKIGVSGVCGSQLGEIDGAKGEDKYLPHLLG 67
           RAA+     +PL + E+++ P  + G+VL+KI  +GVC +    + G   E  + P +LG
Sbjct: 4   RAAVAFGPGKPLEIVEIDVEPPRK-GEVLIKITNTGVCHTDAFTLSGDDPEGLF-PVVLG 61

Query: 68  HEASGIVQEVGPGVRFVKPGDHVVLHW---------------------RKSQGIESLP-- 104
           HE +GIV EVG GV  VKPGDHV+  +                     R +QG   +P  
Sbjct: 62  HEGAGIVVEVGEGVTSVKPGDHVIPLYTAECGECLFCKSGKTNLCVAVRATQGKGLMPDG 121

Query: 105 -PKYTWRGKTLNAGL-IATFNEYAIVSENRVTRIDPSSDMDVAALFGCAVTTGFGVAENN 162
             ++++ G+ L   +  +TF+EY +V+E  + +I+P ++ +   L GC VTTG G   N 
Sbjct: 122 TTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPDANPEHVCLLGCGVTTGIGAVHNT 181

Query: 163 ADIRLGESVVVFGAGGVGLNIIQAASLRSAYPIIAVDLHEGRLELAKQVGATHLINASKV 222
           A ++ G+SV +FG GG+GL  IQ A    A  IIA+D +  + ELA+  GAT  +N    
Sbjct: 182 AKVQPGDSVAIFGLGGIGLAAIQGARQAKAGRIIAIDTNPAKFELARTFGATECLNPKDF 241

Query: 223 DA--RTALVELMGKQGIDVFIDNTGQPPIIEMGYELT-KAQGRVVLVGVPRAGRNISIYS 279
           D      L+E+ G  G+D   +  G   ++    E   +  G+ +++GV  AG+ IS   
Sbjct: 242 DKPIHEVLIEMTG-WGVDHTFECIGNVNVMRSALEAAHRGWGQSIVIGVAGAGKEISTRP 300

Query: 280 LPLHFEKTISGSHGGETVPHVDIPRYTKLLDAGLIQLKPLITEHFKLDDINVAIERMRSG 339
             L   +T  GS  G       +P   +    G I L P +T    LD+IN A + M  G
Sbjct: 301 FQLVTGRTWKGSAFGGVKGRTQLPGMVEDAMKGEIDLAPFVTHTMGLDEINHAFDLMHEG 360


>gi|134094301|ref|YP_001099376.1| putative glutathione-dependent
           formaldehyde dehydrogenase [Herminiimonas
           arsenicoxydans]
          Length = 368

 Score =  145 bits (367), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 117/358 (32%), Positives = 174/358 (48%), Gaps = 28/358 (7%)

Query: 8   RAAILAQLQQPLIVDEVELPPQLEVGQVLVKIGVSGVCGSQLGEIDGAKGEDKYLPHLLG 67
           +AA+  +  QPL ++EVEL    E G+VLV+I  +G+C +    + GA  E  + P +LG
Sbjct: 4   KAAVAWKAGQPLTIEEVELGGPRE-GEVLVEIKATGICHTDYYTLSGADPEGIF-PAILG 61

Query: 68  HEASGIVQEVGPGVRFVKPGDHVVLHW---------------------RKSQGIESLP-- 104
           HE +G+V EVG GV+ +K  DHV+  +                     R +QG   +P  
Sbjct: 62  HEGAGVVVEVGAGVKSLKKDDHVIPLYTPECRECKFCLSRKTNLCQKIRSTQGRGLMPDA 121

Query: 105 -PKYTWRGKTLNAGL-IATFNEYAIVSENRVTRIDPSSDMDVAALFGCAVTTGFGVAENN 162
             +++  GK L   +  +TF+ Y +V E  + +I   +  D     GC VTTG G     
Sbjct: 122 TSRFSIDGKPLFHYMGTSTFSNYIVVPEIALAKIREDAPFDKVCYIGCGVTTGVGAVLFT 181

Query: 163 ADIRLGESVVVFGAGGVGLNIIQAASLRSAYPIIAVDLHEGRLELAKQVGATHLINASKV 222
           A +  G +VVVFG GG+GLN+IQAA +  A  II VDL+  R  +A++ G TH IN SKV
Sbjct: 182 AKVEAGANVVVFGLGGIGLNVIQAAKMVGADKIIGVDLNPAREAMARKFGMTHFINPSKV 241

Query: 223 DARTALVELMGKQGIDVFIDNTGQPPIIEMGYELT-KAQGRVVLVGVPRAGRNISIYSLP 281
           +     +  +   G D   +  G    +    E   K  G+ +++GV  AG  IS     
Sbjct: 242 ENVVDAIVQLTDGGADYSFECIGNVHTMRQALECCHKGWGQSIVIGVAEAGAEISTRPFQ 301

Query: 282 LHFEKTISGSHGGETVPHVDIPRYTKLLDAGLIQLKPLITEHFKLDDINVAIERMRSG 339
           L   +   GS  G      D+P+       G + +  LIT    L+ IN   + M+SG
Sbjct: 302 LVTGREWKGSAFGGARGRTDVPKIVDWYMEGKLNIDDLITHTLPLERINEGFDLMKSG 359


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.139    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 690,274
Number of extensions: 30664
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 2
Length of query: 351
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 268
Effective length of database: 726,862
Effective search space: 194799016
Effective search space used: 194799016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)