BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4244.p
         (275 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094088|ref|YP_001099163.1| transketolase [Herminiimonas ar...   103   1e-23

>gi|134094088|ref|YP_001099163.1| transketolase [Herminiimonas
           arsenicoxydans]
          Length = 668

 Score =  103 bits (256), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 127/275 (46%), Gaps = 17/275 (6%)

Query: 11  IASQLRGRIIDNAHRTQTPHLGSCLSCVDILTAAYFSTLRIDPSQPADPLRDRFILSKGH 70
           +A+ +R   +D   +  + H G+ +   DI  A + +    +P+ P    RDRF+LS GH
Sbjct: 10  MANAIRALAMDAVQKANSGHPGAPMGMADIAVALWSNHYSHNPANPKWINRDRFVLSNGH 69

Query: 71  GAAALFQVLALRGFYPQSLLDDYGKDGGIFAEHP--PTPDHLPGIEAATGSLGHGLPIGL 128
           G+   + +L L G+     +D+      + ++ P  P  D  PGIE  TG LG G+   +
Sbjct: 70  GSMLHYALLHLTGY--DLSMDEIRNFRQMHSKTPGHPEVDITPGIETTTGPLGQGITNAV 127

Query: 129 GMALAGRIQQRRYD----------VTVLLGDGECNEGSVWEAAMMAAAQRVGNLMVLVDF 178
           GMALA ++    ++            V LGDG   EG   EA  +A   R+  L+   D 
Sbjct: 128 GMALAEKLLAAEFNRPNFNVVDHHTYVFLGDGCLMEGISHEACSLAGTLRLPKLIAFYDD 187

Query: 179 NKWQATGRSEEVLALNPLVDKWRAFGWDATE-IDGHDMSTLVELMGRPRAADSKPIAVVA 237
           N     G  E     +    ++ A+GW+    IDGHD++ +   + + +A+D KP  +  
Sbjct: 188 NGISIDGHVEGWFQ-DDTPKRFEAYGWNVVRAIDGHDVNAVDAAIKQAKASD-KPTLICC 245

Query: 238 HTIKGKGVSFMEDDNNWHYRIPNADEVAAAYQELG 272
            T+ GKG   M   +N H       E+AA    +G
Sbjct: 246 KTVIGKGSPNMAGTHNVHGAALGDKEIAATRAAIG 280


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 582,398
Number of extensions: 25609
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 195
Effective length of database: 736,747
Effective search space: 143665665
Effective search space used: 143665665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)