BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4243.p (330 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094383|ref|YP_001099458.1| dTDP-glucose 4,6 dehydratase [H... 136 1e-33 gi|134094365|ref|YP_001099440.1| putative CDP-glucose 4,6-dehydr... 70 1e-13 gi|134094363|ref|YP_001099438.1| putative UDP-glucose-4-epimeras... 68 5e-13 >gi|134094383|ref|YP_001099458.1| dTDP-glucose 4,6 dehydratase [Herminiimonas arsenicoxydans] Length = 367 Score = 136 bits (343), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 102/360 (28%), Positives = 165/360 (45%), Gaps = 45/360 (12%) Query: 6 LVIGSNSFSGASFV-DYLLRQGHDVIGASRSQEPHQAFLPYRWSEHQAA-------FKFY 57 LV G F G++FV D+L + V+ + L Y + + A F Sbjct: 3 LVTGGAGFIGSNFVLDWLAQSDEPVVNVDK--------LTYAGNPNNLASLRDDTRHIFV 54 Query: 58 PYDLNKDLAALTELIHREKPACVVNFAAQSMVAESWKNPEHWFETNVMATIRLHEVLR-- 115 D+ D + EL+ KP +V+FAA+S V S P + TN+ T L E R Sbjct: 55 HADI-CDSDKMQELLSTYKPTAIVHFAAESHVDRSIHGPAEFVRTNINGTFSLLEAARTY 113 Query: 116 --QCDFLDK----YVHITTPEVYGS---TDGFIKEDTPFNPSTPYAVSRAAADMSLKTYF 166 Q +K ++H++T EVYG+ D E T + P++PY+ S+AA+D +++Y Sbjct: 114 WPQLTSAEKEQFRFLHVSTDEVYGTLGPDDAPFSETTAYAPNSPYSASKAASDHLVRSYH 173 Query: 167 EAYGFPVVFTRAANVYGPGQQLYRIIPRTILSVLTGKKLQLHGGGLSRRSFIHMRDVSSA 226 YG P + T +N YGP ++IP I + L GK L ++G G R ++++ D +A Sbjct: 174 HTYGLPTLTTNCSNNYGPYHFPEKLIPLIIANALAGKPLPIYGDGQQIRDWLYVGDHCTA 233 Query: 227 THAIASRGVNGQTYHISTDEIVSVRELVERICAKL--------GVDFAANVEIVGERLGK 278 + G G+TY+I + ++V +C L G + + V +R G Sbjct: 234 IRRVLQAGKPGETYNIGGWNEKANLDVVNTLCDMLDALQPNGAGSSYRKQITYVADRPGH 293 Query: 279 DAAYMLDSSKLRQTLDWSVKISLDEGLDECVNWVQQNL---------DAMKAMEWNYVHK 329 D Y +D+ K+ + L W + D G+ + V W +N D MK +E NY + Sbjct: 294 DRRYAIDARKIERELGWKPAETFDSGIRKTVQWYLENQAWVRDVQSGDYMKWLEKNYQQR 353 >gi|134094365|ref|YP_001099440.1| putative CDP-glucose 4,6-dehydratase [Herminiimonas arsenicoxydans] Length = 307 Score = 70.5 bits (171), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 14/180 (7%) Query: 64 DLAALTELIHREKPACVVNFAAQSMVAESWKNPEHWFETNVMATIRLHEVLRQCDFLDKY 123 D AAL E I +P V + AAQS+V S+ NP ++TNVM T+ + E LR+ D Sbjct: 10 DQAALEEAILAVQPDFVFHLAAQSLVRRSYDNPIETWQTNVMGTLHVLEALRKLDKSCAA 69 Query: 124 VHITTPEVYGSTD---GFIKEDTPFNPSTPYAVSRAAADMSLKTYFEAYGFP-------V 173 V IT+ + Y + + G+ + D P PY+ S+ AA+++++++ ++Y FP + Sbjct: 70 VIITSDKCYDNVEWVWGYRETDAMGGPD-PYSASKGAAELAIRSHIKSY-FPKATSKVRI 127 Query: 174 VFTRAANVYGPGQQL-YRIIPRTILSVLTGKKLQLHGGGLSRRSFIHMRDVSSATHAIAS 232 RA NV G G RI+P + + ++L S R + H+ + S ++A+ Sbjct: 128 AAARAGNVIGGGDWADDRIVPDCVKAWANNDDVELRNPH-STRPWQHVLEPLSGYLSLAA 186 >gi|134094363|ref|YP_001099438.1| putative UDP-glucose-4-epimerase [Herminiimonas arsenicoxydans] Length = 309 Score = 68.2 bits (165), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 70/302 (23%), Positives = 132/302 (43%), Gaps = 26/302 (8%) Query: 13 FSGASFVDYLLRQGHDVIGASRSQEPHQAFLPYRWSEHQAAFKFYPYDLNKDLAALTELI 72 F G SF+++ L G+++ P +E + +L+ + A L Sbjct: 11 FIGQSFIEFALEHGYNLRVLDHKSCP---------AEFDGRLTWVQGNLSSEEAVRKVL- 60 Query: 73 HREKPACVVNFAAQSMVAESWKNPEHWFETNVMATIRLHEVLRQCDFLDKYVHITTPEVY 132 +K V +F + ++ + + NV+ T+ L ++ Q + + + V I++ VY Sbjct: 61 --QKSDIVFHFISSTVPGDVADEGGELIQ-NVVETLHLLKLCLQ-EKVSRVVFISSASVY 116 Query: 133 GSTDGF-IKEDTPFNPSTPYAVSRAAADMSLKTYFEAYGFPVVFTRAANVYGPGQQL--- 188 G I E +P + + + + + + L+ Y YG R +N YGP Q + Sbjct: 117 GVQPVLPIAETALTDPISSHGIHKLSIEKYLQLYKYQYGLDCKIMRLSNPYGPRQSIKGR 176 Query: 189 YRIIPRTILSVLTGKKLQLHGGGLSRRSFIHMRDVSSATHAIASRGVNGQTYHISTDEIV 248 + + +L G + + G G + R FI++ DV SA H +A V +++ + + Sbjct: 177 QGFVAIALGKILAGDAISIRGDGSAIRDFIYIADVCSALHLLAITKVKDSVFNVGSGQGY 236 Query: 249 SVRELV---ERICAKLGVDFAANVEIVGERLGKDAAYMLDSSKLRQTLDWSVKISLDEGL 305 S+ ++V E+I + V V R A +LD S+ R+ L +K SL++GL Sbjct: 237 SLNQVVEGMEKITEQRLV-----TSYVASRFVDIPASVLDVSRAREQLGHVIKYSLEQGL 291 Query: 306 DE 307 E Sbjct: 292 AE 293 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.134 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 635,285 Number of extensions: 25240 Number of successful extensions: 86 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 82 Number of HSP's successfully gapped: 3 Length of query: 330 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 248 Effective length of database: 730,157 Effective search space: 181078936 Effective search space used: 181078936 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)