BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4242.p
         (195 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093466|ref|YP_001098541.1| DnaA initiator-associating prot...    84   6e-18

>gi|134093466|ref|YP_001098541.1| DnaA initiator-associating protein
           diaA [Herminiimonas arsenicoxydans]
          Length = 198

 Score = 83.6 bits (205), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 72/124 (58%), Gaps = 2/124 (1%)

Query: 44  GRQVFLCGNGGSAGNAIHLANDFLYGIAKRTGGGMRVSALSANAAVLTCLANDIGYDHIY 103
           G ++  CGNGGSA +  H +   L G  +R    + V AL+ + ++LT + ND  Y  I+
Sbjct: 42  GNKILACGNGGSAADCQHFSAQ-LVGRFERERLPLPVMALTTDTSILTAIGNDYSYQEIF 100

Query: 104 SEQLAVQAQPGDLLIALSGSGNSANILRALEQARKMDVISCAILGYSGGK-AKALCDIPI 162
           S+Q+    Q GD+L+ALS SGNSAN++ A+E A + D+    + G  GG  AK + D  +
Sbjct: 101 SKQVQAFGQSGDVLLALSTSGNSANVIAAIEAALERDMRVVVMTGKGGGAMAKLITDADV 160

Query: 163 HFAV 166
           H  V
Sbjct: 161 HICV 164


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 376,703
Number of extensions: 14890
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 118
Effective length of database: 746,632
Effective search space: 88102576
Effective search space used: 88102576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)