BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4241.p
         (316 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094368|ref|YP_001099443.1| putative UDP-glucose 4-epimeras...    81   5e-17
gi|134094380|ref|YP_001099455.1| UDP-glucose 4-epimerase [Hermin...    64   8e-12
gi|134094374|ref|YP_001099449.1| nucleoside-diphosphate-sugar ep...    64   1e-11

>gi|134094368|ref|YP_001099443.1| putative UDP-glucose 4-epimerase
           [Herminiimonas arsenicoxydans]
          Length = 318

 Score = 81.3 bits (199), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 136/311 (43%), Gaps = 41/311 (13%)

Query: 1   MNILVTGGCGYKGSVLVPKLLARGYKVHVLDIMWFGNYLAPHPNLTVTAGDVRNIDQIN- 59
           M IL+TGG G+ G  +   L   G+++      + G+  A  P   +   +V   D  N 
Sbjct: 1   MRILITGGYGFVGGRVAQHLQQLGHQI------FLGSRQARLPPNWLPQAEVLQTDWSND 54

Query: 60  ------LDGVDTIIHLSSVANDPCGDLDPKLTWEVSALATMQLADKAVRKGVKQFIYASS 113
                  DGVD +IH + +    CG  DP    E + LAT +L D A R GV++FIY S+
Sbjct: 55  RILEQACDGVDVLIHAAGMNAHDCG-ADPVAALEFNGLATSRLVDVASRVGVQRFIYLST 113

Query: 114 GSVYGVKEELQVTEDLELKPISEYNKTKMVSEPVLLSYKDRMIVQ--IVRPATVCGYSPR 171
             VY       ++ED+  + +  Y  + +  E  LLS      ++  ++R + V G    
Sbjct: 114 AHVYANPLIGHISEDVCPRNMHPYASSHLAGENALLSAAQYGKIKGIVLRLSNVFGAPAH 173

Query: 172 MRLD---VSVNLLTMQALAKGKITV-FGGTQVRPNIHIDDITDVYLHLIDHPEIT---GV 224
             ++   + VN L  QA+  G++T+   G Q R  + + +      H++   E     G+
Sbjct: 174 KDVNCWTLLVNELCRQAVTAGRLTLRSSGLQRRDFVGMQETCRAVSHVLGLSEEQVGDGI 233

Query: 225 YNAGFENI-SILDIAKMVAKHIPVDIVVTESNDPRSYRVNS-------------DKLLAT 270
           +N G      ++D+ ++    I    +    + P   R  S             D+LLA+
Sbjct: 234 FNVGGAWAPRVIDMTEL----IQARCLAVLGSTPEIMRAKSSGAEVTHELDFQIDRLLAS 289

Query: 271 GFKPSKSVETA 281
           GF  S ++ TA
Sbjct: 290 GFDRSANINTA 300


>gi|134094380|ref|YP_001099455.1| UDP-glucose 4-epimerase
           [Herminiimonas arsenicoxydans]
          Length = 312

 Score = 64.3 bits (155), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 107/235 (45%), Gaps = 32/235 (13%)

Query: 3   ILVTGGCGYKGSVLVPKLLARGYK----VHVLDIMWFGNYLAPHPNLTVTAGDVR-NID- 56
           ILVTG  G+ GS L   L  RG      V   D+           N  ++ GD+  + D 
Sbjct: 4   ILVTGANGFVGSSLCDTLCRRGMDFVPVVRKADL-----------NGQISVGDLGPDTDW 52

Query: 57  QINLDGVDTIIHLSS---VANDPCGDLDPKLTWE-VSALATMQLADKAVRKGVKQFIYAS 112
              LDG D +IHL++   V ND   D  P   +  V+  AT+ LA +A+ KGVK+F++ S
Sbjct: 53  TAALDGCDVVIHLAARVHVMNDSASD--PLAAFRAVNVDATLNLARQALAKGVKRFVFVS 110

Query: 113 SGSVYGVKEELQV-TEDLELKPISEYNKTKMVSEPVL--LSYKDRMIVQIVRPATVCGYS 169
           S  V G +   Q  T   E  PI  Y ++K+ +E  L  L     + V IVRP  V  Y 
Sbjct: 111 SIKVNGEETTNQAFTAFDEPAPIDPYGQSKLEAEIALQELGNVTGLEVVIVRPPLV--YG 168

Query: 170 PRMRLDVSVNLLTMQALAKGKITVFGGTQVRPN-IHIDDITDVYLHLIDHPEITG 223
           P +R +       MQ +  G     G    R + + +D++ D+ +    HP   G
Sbjct: 169 PGVRANFR---RLMQLVKIGVPLPLGAIHNRRSMVAVDNLVDLLVLCASHPAAAG 220


>gi|134094374|ref|YP_001099449.1| nucleoside-diphosphate-sugar
           epimerase [Herminiimonas arsenicoxydans]
          Length = 317

 Score = 63.9 bits (154), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 13/226 (5%)

Query: 3   ILVTGGCGYKGSVLVPKLLARG-YKVHVLDIMWFGNYLAPHPNLTVTAGDVRNIDQINLD 61
           I++TG  GY G  LV KLLA G Y+V VL              ++ +A    N  ++ + 
Sbjct: 4   IVITGASGYIGRCLVTKLLALGDYRVKVLT--------RHSQEISSSACLFPNSVEVVIG 55

Query: 62  GVDTIIHLSSVANDPCGDLDPKLTWEVSALATMQLADKAVR----KGVKQFIYASSGSVY 117
            +     L+ +    C  ++    W       + +    +R     GV + I+ S+ +V 
Sbjct: 56  DLQAPELLTGLFERDCTVINLVYMWGAGIADNVAVTTNLLRLCSAAGVGRIIHCSTAAVV 115

Query: 118 GVKEELQVTEDLELKPISEYNKTKMVSEPVLLSYKDRMIVQIVRPATVCGYSPRMRLDVS 177
           G  EE  VTED    PI+EY KTK+  E V+   ++   V I+RP  V G        ++
Sbjct: 116 GRVEENDVTEDTVSNPITEYGKTKLAVEEVIRGAQNFCDVAILRPTAVFGIDGAPLKKLA 175

Query: 178 VNLLTMQALAKGKITVFGGTQVRPNIHIDDITDVYLHLIDHPEITG 223
            +L   + +     +   G +    +H+D++    L  ID+ +  G
Sbjct: 176 SDLAAGKRVTNYLKSCLFGRRRMNLVHVDNVVASLLFFIDYQDKFG 221


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 590,782
Number of extensions: 23510
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 3
Length of query: 316
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 234
Effective length of database: 730,157
Effective search space: 170856738
Effective search space used: 170856738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)