BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4238.p
         (259 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094367|ref|YP_001099442.1| glucose-1-phosphate cytidylyltr...   238   2e-64

>gi|134094367|ref|YP_001099442.1| glucose-1-phosphate
           cytidylyltransferase [Herminiimonas arsenicoxydans]
          Length = 253

 Score =  238 bits (607), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 122/251 (48%), Positives = 162/251 (64%), Gaps = 3/251 (1%)

Query: 1   LKVVILAGGLGTRLGEETDVRPKPMVEIGGKPILWHIMKGYSQHGFNEFVILLGYKGYLI 60
           +KV++LAGG GTRL E TDV PKPMV IGGKPILWHIM+ Y++ G  +F + LGYK  +I
Sbjct: 1   MKVILLAGGFGTRLAEYTDVIPKPMVPIGGKPILWHIMQTYARFGHKDFYVALGYKAEVI 60

Query: 61  KEFFANYFLHQGDVTIDLADNRVEVHRNKSEPWKVTLVETGLHTQTGGRLLAARDYLKED 120
           KE+F NY     D TIDLA   V   +     W+VTLV TG  + TGGR+   R  +  +
Sbjct: 61  KEYFLNYRALNADFTIDLASGGVTSLQVDPVDWRVTLVNTGEASMTGGRVKRMRSLIGNE 120

Query: 121 DFMLTYGDGVSDVDVSALVAHHQAHPQTLVTMTTVQPEARFGMVQTDEAGFIRDFREKPP 180
             MLTYGDGV+D+D+ AL+A H++H + +VT++ V+P ARFG +  D A  +  F+EKP 
Sbjct: 121 TCMLTYGDGVADIDLDALLAFHRSHGK-MVTVSAVRPAARFGELDLDGAR-VESFQEKPQ 178

Query: 181 GDLGWINGGFMVCRQGVFDYLKDGEATIFERAPLEQIAGDGRLLNWPHHGFWKCMDTLRD 240
              GWINGG+ +     FD +  G++T+ ER PLEQ    G L+ + H GFW CMDT RD
Sbjct: 179 LQEGWINGGYFIFEPAFFDMIA-GDSTLLEREPLEQATKAGELMAYRHDGFWHCMDTKRD 237

Query: 241 KIQLNQMWEQG 251
              L  +W +G
Sbjct: 238 HELLESLWAKG 248


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.141    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 567,177
Number of extensions: 24916
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 179
Effective length of database: 736,747
Effective search space: 131877713
Effective search space used: 131877713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)