BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4234.p
         (316 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094386|ref|YP_001099461.1| TDP-rhamnose synthetase, NAD(P)...   238   2e-64

>gi|134094386|ref|YP_001099461.1| TDP-rhamnose synthetase,
           NAD(P)-binding [Herminiimonas arsenicoxydans]
          Length = 271

 Score =  238 bits (608), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 126/278 (45%), Positives = 172/278 (61%), Gaps = 19/278 (6%)

Query: 31  EVIAPTRAQLDLADLDALRAAVRHAQPDLILHPAAYTAVVKAESEPELARRLNAEAPAVL 90
           E++A  R Q+DLA+LD +R  +R  +P LI++PAAYTAV  AES P+LA R+NA+AP V+
Sbjct: 3   EIVALDRQQMDLANLDQVRDVIRSVKPQLIINPAAYTAVDLAESAPDLAMRINADAPGVM 62

Query: 91  AEEAARLGAALVHFSTDYVFDGRHDGRYTEDMPTNPLNVYGATKREGELTIAASGAAYWI 150
           A EA +LGAA++H+STDYVFDG     YTE+   +P +VYG +K  GE  I A+G  + I
Sbjct: 63  AAEAKKLGAAMIHYSTDYVFDGDKAESYTEEDVPHPQSVYGRSKLAGEQAIQAAGIPHLI 122

Query: 151 LRTSWVYNLAGNNFMKTAIRLAQQKESYTIVGDQFGAPTWASTIAAVCCRMLAGAGGGRE 210
           LRTSW+Y L G NF+ T  RLAQ+++   IV DQFGAPTW+ T+A V    +    GG  
Sbjct: 123 LRTSWIYGLRGKNFLLTVQRLAQERDELRIVADQFGAPTWSRTLAEVTAHAICQLQGGGT 182

Query: 211 KV-------AATSGIYHLTAAGATSWHGYASLIASELMARGVTLKLKGLEQ--ITPVPTS 261
           +        +A SG+YH+TA G TSWHG+   I +            GL+Q  +TP+ T 
Sbjct: 183 QANVDHAAWSAHSGLYHVTAQGRTSWHGFTQAIIAH---------SSGLKQPKVTPIATQ 233

Query: 262 SYPTPPERPLNSRLDCSKLERSFGLTLPAWDEDALACL 299
            YP P +RP NS L   +  ++F   LP W+     C+
Sbjct: 234 DYPLPAKRPQNSVLSSQRFMQAF-CRLPEWEAALKLCV 270


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 526,953
Number of extensions: 18408
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 234
Effective length of database: 730,157
Effective search space: 170856738
Effective search space used: 170856738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)