BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4232.p
         (300 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094384|ref|YP_001099459.1| dTDP-glucose pyrophosphorylase ...   479   e-137
gi|134093973|ref|YP_001099048.1| putative mannose-1-phosphate gu...    74   1e-14
gi|134093642|ref|YP_001098717.1| putative nucleotidyl transferas...    59   4e-10

>gi|134094384|ref|YP_001099459.1| dTDP-glucose pyrophosphorylase
           [Herminiimonas arsenicoxydans]
          Length = 301

 Score =  479 bits (1233), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 226/296 (76%), Positives = 258/296 (87%)

Query: 5   AQASRRKGIILAGGSGTRLYPATTVVSKQLMPIYDKPMVYYPLSSLMLAGIRDILLISTP 64
           A  + RKGIILAGGSGTRLYP T  VSKQL+P+YDKPM+YYPL++LMLAGIRDILLISTP
Sbjct: 6   ANPASRKGIILAGGSGTRLYPVTISVSKQLLPVYDKPMIYYPLTTLMLAGIRDILLISTP 65

Query: 65  QDTPRFAELLGDGQQWGLNISYAVQPSPDGLAQAFLIGRDFIGADPSALILGDNIFYGRD 124
           QDTPRF ELLGDG QWG+N++YAVQP+PDGLAQAF+IGR FI   PSALILGDNI+YG  
Sbjct: 66  QDTPRFQELLGDGSQWGINLTYAVQPTPDGLAQAFIIGRSFIDNGPSALILGDNIYYGHA 125

Query: 125 LEPPMRVANARLDGATIFAYHVQDPERYGVVEFDSQRRVIGIEEKPLQPKSNFAVTGLYF 184
            +  +R A+ R  G+T+FAYHVQDPERYGVVEFD  RR I IEEKPL PKSN+AVTGLYF
Sbjct: 126 FDQQLRQASERRSGSTVFAYHVQDPERYGVVEFDKARRAISIEEKPLIPKSNYAVTGLYF 185

Query: 185 YDNQVIDIAREIKPSARGELEITDVNRAYLERGQLQVELMGRGIAWLDTGTHESLLDAGQ 244
           YD+QV DIA  IKPSARGELEITDVNR YL RG+L VELMGRG+AWLDTGTHESLL+AGQ
Sbjct: 186 YDDQVCDIAASIKPSARGELEITDVNRTYLARGELNVELMGRGMAWLDTGTHESLLEAGQ 245

Query: 245 FIATIEKRQGLKIACPEEIAYRRGYIDAAQLEKLAAPLKKNAYGKYLIQLLTDSSY 300
           FIATIE RQGLK+ACPEEIA+R+GYIDAA+LE+LA PLKKN YG+YL+++L D  +
Sbjct: 246 FIATIENRQGLKVACPEEIAFRKGYIDAAKLEQLAEPLKKNGYGRYLMRILDDKVF 301


>gi|134093973|ref|YP_001099048.1| putative mannose-1-phosphate
           guanyltransferase [Herminiimonas arsenicoxydans]
          Length = 391

 Score = 73.9 bits (180), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 104/202 (51%), Gaps = 26/202 (12%)

Query: 11  KGIILAGGSGTRLYPATTVVSKQLMPIYDKPMVYYPLSSLMLAGIRDILLISTPQDTPRF 70
           K +ILA G GTR+ P T  + K ++PI  KP++ Y +  L+  GI +I +++      + 
Sbjct: 2   KAMILAAGKGTRVQPLTYELPKPMIPILGKPVMEYLVEHLVKYGITEI-MVNVSYLHQKI 60

Query: 71  AELLGDGQQWGLNISYA----------VQPSPDGLAQAFLIGRDFIG--ADPSALILGDN 118
            +  G+GQ++G  I Y+          V P P G A      ++F G   + + +I GD 
Sbjct: 61  EDYFGEGQRFGAQIGYSFEGYMTDDGEVMPKPIGSAGGLKKIQEFGGFFDETTLVICGDA 120

Query: 119 IFYGRDLEPPMRVANARLDGA--TIFAYHVQDPER---YGVVEFDSQRRVIGIEEKPLQP 173
           +    DL+    +   R  GA  +I    V  PE+   YG+V  D + RV+  +EKP +P
Sbjct: 121 LI---DLDIKSALFEHRQKGALVSIITKEVA-PEKTVDYGMVVTDEEGRVLSFQEKP-KP 175

Query: 174 K---SNFAVTGLYFYDNQVIDI 192
           +   SN A TG+Y ++ +V+++
Sbjct: 176 EEALSNLASTGIYIFEPEVLEL 197


>gi|134093642|ref|YP_001098717.1| putative nucleotidyl transferase
           [Herminiimonas arsenicoxydans]
          Length = 236

 Score = 58.5 bits (140), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 108/245 (44%), Gaps = 36/245 (14%)

Query: 11  KGIILAGGSGTRLYPATTVVSKQLMPIYDKPMVYYPLSSLMLAGIRDILLISTPQDTPRF 70
           K +I A G G R+ P T    K L+ +  +P++ + + +L+ AGI+DI +I+        
Sbjct: 2   KAMIFAAGRGERMRPLTDTCPKPLLKVRGRPLIVWHILNLVRAGIKDI-VINHAHLGGMI 60

Query: 71  AELLGDGQQWGLNISYAVQ----PSPDGLAQAFLIGRDFIGADPSALILGDNIFYGRDLE 126
            E LG+G+Q+G N+ Y+ +     +  G+AQA    R  +G +P   +  D      D +
Sbjct: 61  EEALGNGEQFGANLIYSAEGEALETAGGVAQA----RHLLGDEPFLALAADIYCPHFDFK 116

Query: 127 PPMRVANAR--------LDGATI-FAYHVQDPERYGVVEFDSQRRVIGIEEKPLQPKSNF 177
               V            LD   + + Y V++P  +   +F      I  E    +P+  F
Sbjct: 117 QVRGVLEDNDVWGNPYPLDQRDVAWLYLVKNPSHHLQGDFALHSFSIANEG---EPRLTF 173

Query: 178 AVTGLY---FYDNQVIDIAREIKPSARGELEITDVNRAYLERGQLQVELMGRGIAWLDTG 234
           +  G+Y    +D+     + ++ P          + R Y  RGQ+  EL  RG  W D G
Sbjct: 174 SGIGVYRPSMFDSITAGESAKLAP----------LLREYAARGQVGGELY-RG-DWTDVG 221

Query: 235 THESL 239
           T E L
Sbjct: 222 TAERL 226


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.139    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 591,627
Number of extensions: 25898
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 3
Length of query: 300
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 219
Effective length of database: 733,452
Effective search space: 160625988
Effective search space used: 160625988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)